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MSGene - Polymorphism Details
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 Study: IMSGC, 2011
 Gene: CD6  (FLJ44171; TP120)  Entrez Gene
 Protein: CD6 molecule  (CD6 antigen; T-cell differentiation antigen CD6; T12)  ProteinLink
 Chromosome: 11   (View: 1  2  3  4  5  6  7  8  9  10  11  12  13  14  15  16  17  18  19  20  21  22  X  Y  MT)
 Status: Updated 25 November 2011
Meta-Analysis     Gene Overview
Total number of polymorphisms investigated by this study: 1

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)
Population   G-Allele C-Allele G/G
(frequency)
G/C
(frequency)
C/C
(frequency)
 Caucasian
rs17824933 Belgium MS
CTR
0.26
0.21
0.74
0.79
71 (0.069)
33 (0.043)
396 (0.387)
254 (0.327)
555 (0.543)
489 (0.630)
rs17824933 Denmark MS
CTR
0.20
0.20
0.80
0.80
44 (0.040)
26 (0.041)
350 (0.321)
204 (0.322)
696 (0.639)
404 (0.637)
rs17824933 Finland MS
CTR
0.19
0.16
0.81
0.84
38 (0.035)
19 (0.024)
330 (0.307)
209 (0.264)
708 (0.658)
564 (0.712)
rs17824933 Germany MS
CTR
0.24
0.23
0.76
0.77
51 (0.056)
50 (0.054)
329 (0.361)
330 (0.355)
532 (0.583)
550 (0.591)
rs17824933 Italy MS
CTR
0.26
0.28
0.74
0.72
44 (0.070)
67 (0.081)
244 (0.388)
337 (0.407)
341 (0.542)
423 (0.511)
rs17824933 Norway MS
CTR
0.19
0.20
0.81
0.80
37 (0.036)
25 (0.038)
315 (0.307)
209 (0.316)
675 (0.657)
428 (0.647)
rs17824933 Spain MS
CTR
0.28
0.27
0.72
0.73
40 (0.080)
37 (0.074)
203 (0.405)
199 (0.397)
258 (0.515)
265 (0.529)
rs17824933 Sweden MS
CTR
0.22
0.18
0.78
0.82
80 (0.046)
68 (0.034)
582 (0.338)
603 (0.299)
1062 (0.616)
1346 (0.667)
rs17824933 UK MS
CTR
0.23
0.22
0.77
0.78
38 (0.053)
32 (0.049)
254 (0.356)
227 (0.346)
421 (0.590)
397 (0.605)
rs17824933 USA MS
CTR
0.28
0.23
0.72
0.77
46 (0.078)
35 (0.054)
236 (0.402)
230 (0.357)
305 (0.520)
379 (0.589)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
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Top Results Details
1. HLA-DRB1
2. IL2RA
3. IL7R
4. TAGAP
5. CLEC16A
6. EVI5
7. GWA_16q24.1
8. GWA_5p13.1
9. TTC34
10. AHI1   
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MSGene Stats
Studies: 789
Genes: 809
Polymorphisms: 2907
Meta-analyses: 324
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