MSGene

MSGene - Polymorphism Details

Study:

Niino, 2003

Gene:

SPP1 (BNSP; BSPI; ETA-1; MGC110940; OPN)

View on SZGene

Protein:

secreted phosphoprotein 1 (SPP1/CALPHA1 fusion; bone sialoprotein I; early T-lymphocyte activation 1; osteopontin; osteopontin/immunoglobulin alpha 1 heavy chain constant region fusion protein; secreted phosphoprotein 1 (osteopontin, bone sialoprotein I, early T-lymphocyte activation 1); secreted phosphoprotein-1 (osteopontin, bone sialoprotein))

Chromosome:

4 (View: 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 X Y MT)

Status:

Updated 25 November 2011

Total number of polymorphisms investigated by this study: 3

Case-Control Studies (by ethnic group)
					Genotypes
Polymorphism ID# (Link to NCBI)	Population		T-Allele	C-Allele	T/T (frequency)	T/C (frequency)	C/C (frequency)
Asian
rs1126616 (795C/T)	Japan	MS CTR	0.60 0.56	0.40 0.44	46 (0.397) 38 (0.306)	48 (0.414) 64 (0.516)	22 (0.190) 22 (0.177)

Case-Control Studies (by ethnic group)
					Genotypes
Polymorphism ID# (Link to NCBI)	Population		G-Allele	A-Allele	G/G (frequency)	G/A (frequency)	A/A (frequency)
Asian
rs1126772 (1128A/G)	Japan	MS CTR	0.40 0.38	0.60 0.62	16 (0.138) 14 (0.113)	60 (0.517) 66 (0.532)	40 (0.345) 44 (0.355)

Case-Control Studies (by ethnic group)
					Genotypes
Polymorphism ID# (Link to NCBI)	Population		C-Allele	T-Allele	C/C (frequency)	C/T (frequency)	T/T (frequency)
Asian
rs4754 (327T/C)	Japan	MS CTR	0.85 0.69	0.15 0.31	90 (0.776) 60 (0.484)	18 (0.155) 52 (0.419)	8 (0.069) 12 (0.097)

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