MSGene

MSGene - Polymorphism Details

Study:

Lundmark, 2006

Gene:

CD4 (CD4mut) View on SZGene

Protein:

CD4 molecule(CD4 antigen; CD4 antigen (p55); CD4 receptor)

Chromosome:

12 (View: 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 X Y MT)

Status:

Updated 25 November 2011

Total number of polymorphisms investigated by this study: 9

Case-Control Studies (by ethnic group)
					Genotypes
Polymorphism ID# (Link to NCBI)	Population		C-Allele	T-Allele	C/C (frequency)	C/T (frequency)	T/T (frequency)
Caucasian
rs1045261	Sweden	MS CTR	0.14 0.14	0.86 0.86	17 (0.021) 17 (0.022)	188 (0.229) 178 (0.234)	617 (0.751) 566 (0.744)

Case-Control Studies (by ethnic group)
					Genotypes
Polymorphism ID# (Link to NCBI)	Population		G-Allele	T-Allele	G/G (frequency)	G/T (frequency)	T/T (frequency)
Caucasian
rs10774450	Sweden	MS CTR	0.41 0.43	0.59 0.57	163 (0.210) 133 (0.185)	313 (0.404) 350 (0.487)	299 (0.386) 236 (0.328)
rs10774450	Norway, Denmark, Finland	MS CTR	0.41 0.41	0.59 0.59	222 (0.183) 223 (0.167)	554 (0.456) 635 (0.476)	440 (0.362) 475 (0.356)

Case-Control Studies (by ethnic group)
					Genotypes
Polymorphism ID# (Link to NCBI)	Population		T-Allele	C-Allele	T/T (frequency)	T/C (frequency)	C/C (frequency)
Caucasian
rs11575099	Sweden	MS CTR	0.03 0.03	0.97 0.97	3 (0.004) 2 (0.003)	33 (0.043) 35 (0.048)	725 (0.953) 690 (0.949)

Case-Control Studies (by ethnic group)
					Genotypes
Polymorphism ID# (Link to NCBI)	Population		G-Allele	A-Allele	G/G (frequency)	G/A (frequency)	A/A (frequency)
Caucasian
rs1894290	Sweden	MS CTR	0.31 0.33	0.69 0.67	88 (0.105) 93 (0.125)	348 (0.416) 310 (0.417)	401 (0.479) 341 (0.458)

Case-Control Studies (by ethnic group)
					Genotypes
Polymorphism ID# (Link to NCBI)	Population		A-Allele	C-Allele	A/A (frequency)	A/C (frequency)	C/C (frequency)
Caucasian
rs2707210	Sweden	MS CTR	0.48 0.51	0.52 0.49	173 (0.217) 173 (0.256)	419 (0.526) 339 (0.502)	204 (0.256) 163 (0.241)

Case-Control Studies (by ethnic group)
					Genotypes
Polymorphism ID# (Link to NCBI)	Population		G-Allele	C-Allele	G/G (frequency)	G/C (frequency)	C/C (frequency)
Caucasian
rs2855534	Sweden	MS CTR	0.40 0.38	0.60 0.62	130 (0.156) 110 (0.143)	404 (0.486) 366 (0.477)	298 (0.358) 291 (0.379)

Case-Control Studies (by ethnic group)
					Genotypes
Polymorphism ID# (Link to NCBI)	Population		C-Allele	T-Allele	C/C (frequency)	C/T (frequency)	T/T (frequency)
Caucasian
rs3213427	Sweden	MS CTR	0.42 0.43	0.58 0.57	152 (0.189) 126 (0.175)	369 (0.459) 365 (0.506)	283 (0.352) 231 (0.320)

Case-Control Studies (by ethnic group)
					Genotypes
Polymorphism ID# (Link to NCBI)	Population		C-Allele	A-Allele	C/C (frequency)	C/A (frequency)	A/A (frequency)
Caucasian
rs3782736	Sweden	MS CTR	0.46 0.47	0.54 0.53	190 (0.239) 156 (0.216)	348 (0.438) 367 (0.509)	257 (0.323) 198 (0.275)
rs3782736	Norway, Denmark, Finland	MS CTR	0.44 0.44	0.56 0.56	262 (0.212) 264 (0.194)	570 (0.461) 680 (0.500)	404 (0.327) 415 (0.305)

Case-Control Studies (by ethnic group)
					Genotypes
Polymorphism ID# (Link to NCBI)	Population		A-Allele	G-Allele	A/A (frequency)	A/G (frequency)	G/G (frequency)
Caucasian
rs7957426	Norway, Denmark, Finland	MS CTR	0.41 0.41	0.59 0.59	219 (0.181) 221 (0.166)	543 (0.449) 642 (0.482)	447 (0.370) 469 (0.352)
rs7957426	Sweden	MS CTR	0.39 0.38	0.61 0.62	148 (0.191) 108 (0.150)	306 (0.394) 328 (0.457)	322 (0.415) 282 (0.393)

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