MSGene

MSGene - Polymorphism Details

Study:

Comabella, 2004

Gene:

SLC11A1 (LSH; NRAMP; NRAMP1)

View on AlzGene

Protein:

solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1 (natural resistance-associated macrophage protein 1; solute carrier family 11 (sodium/phosphate symporters), member 1)

Chromosome:

2 (View: 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 X Y MT)

Status:

Updated 25 November 2011

Total number of polymorphisms investigated by this study: 4

Case-Control Studies (by ethnic group)
					Genotypes
Polymorphism ID# (Link to NCBI)	Population		n.a.-Allele	n.a.-Allele	n.a./n.a. (frequency)	n.a./n.a. (frequency)	n.a./n.a. (frequency)
Caucasian
SLC11A1_2bpSTR-5'UTR	Spain	MS CTR	- -	- -	0 (-) 0 (-)	0 (-) 0 (-)	0 (-) 0 (-)

(-) : Either no data provided, or data otherwise not eligible for inclusion (see methods for details).

Case-Control Studies (by ethnic group)
					Genotypes
Polymorphism ID# (Link to NCBI)	Population		71-Allele	75-Allele	71/71 (frequency)	71/75 (frequency)	75/75 (frequency)
Caucasian
rs17235416 (1729 55del4)	Spain	MS CTR	0.03 0.01	0.97 0.99	0 (0.000) 0 (0.000)	13 (0.067) 3 (0.024)	182 (0.933) 122 (0.976)

Case-Control Studies (by ethnic group)
					Genotypes
Polymorphism ID# (Link to NCBI)	Population		161-Allele	157-Allele	161/161 (frequency)	161/157 (frequency)	157/157 (frequency)
Caucasian
rs17229009 (1729 271del4)	Spain	MS CTR	0.39 0.36	0.61 0.64	25 (0.128) 11 (0.088)	104 (0.533) 68 (0.544)	66 (0.338) 46 (0.368)

Case-Control Studies (by ethnic group)
					Genotypes
Polymorphism ID# (Link to NCBI)	Population		A-Allele	G-Allele	A/A (frequency)	A/G (frequency)	G/G (frequency)
Caucasian
rs17235409 (D543N)	Spain	MS CTR	0.03 0.02	0.97 0.98	0 (0.000) 0 (0.000)	13 (0.067) 5 (0.040)	182 (0.933) 120 (0.960)

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