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MSGene - Polymorphism Details
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 Study: Lorentzen, 2010
 Gene: GPC6  (UNQ369/PRO705; MGC126288; OMIMD1)  Entrez Gene    View on PDGene   View on SZGene
 Protein: glypican 6  (glypican proteoglycan 6; glypican-6)  ProteinLink
 Chromosome: 13   (View: 1  2  3  4  5  6  7  8  9  10  11  12  13  14  15  16  17  18  19  20  21  22  X  Y  MT)
 Status: Updated 10 August 2010
Meta-Analysis     Gene Overview
Total number of polymorphisms investigated by this study: 22

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   G-Allele A-Allele G/G
(frequency)		 G/A
(frequency)		 A/A
(frequency)
 Caucasian
rs11618902 Norway MS
CTR		 0.20
0.20		 0.80
0.80		 54 (0.040)
55 (0.038)		 432 (0.319)
454 (0.314)		 869 (0.641)
937 (0.648)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   C-Allele G-Allele C/C
(frequency)		 C/G
(frequency)		 G/G
(frequency)
 Caucasian
rs11619144 Norway MS
CTR		 0.20
0.20		 0.80
0.80		 54 (0.040)
58 (0.040)		 434 (0.320)
463 (0.320)		 867 (0.640)
925 (0.640)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   C-Allele T-Allele C/C
(frequency)		 C/T
(frequency)		 T/T
(frequency)
 Caucasian
rs11839972 Norway MS
CTR		 0.05
0.04		 0.95
0.96		 3 (0.002)
2 (0.001)		 119 (0.088)
106 (0.073)		 1233 (0.910)
1338 (0.925)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   A-Allele G-Allele A/A
(frequency)		 A/G
(frequency)		 G/G
(frequency)
 Caucasian
rs12876985 Norway MS
CTR		 0.37
0.40		 0.63
0.60		 189 (0.139)
231 (0.160)		 634 (0.468)
694 (0.480)		 533 (0.393)
521 (0.360)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   G-Allele C-Allele G/G
(frequency)		 G/C
(frequency)		 C/C
(frequency)
 Caucasian
rs16949141 Norway MS
CTR		 0.05
0.04		 0.95
0.96		 3 (0.002)
2 (0.001)		 121 (0.089)
106 (0.073)		 1231 (0.908)
1338 (0.925)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   C-Allele T-Allele C/C
(frequency)		 C/T
(frequency)		 T/T
(frequency)
 Caucasian
rs16949153 Norway MS
CTR		 0.05
0.04		 0.95
0.96		 3 (0.002)
3 (0.002)		 119 (0.088)
119 (0.082)		 1233 (0.910)
1324 (0.916)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   A-Allele G-Allele A/A
(frequency)		 A/G
(frequency)		 G/G
(frequency)
 Caucasian
rs16949291 Norway MS
CTR		 0.03
0.02		 0.97
0.98		 1 (0.001)
1 (0.001)		 69 (0.051)
65 (0.045)		 1285 (0.948)
1380 (0.954)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   G-Allele A-Allele G/G
(frequency)		 G/A
(frequency)		 A/A
(frequency)
 Caucasian
rs17267815 Norway MS
CTR		 0.45
0.48		 0.55
0.52		 279 (0.206)
337 (0.233)		 672 (0.496)
722 (0.500)		 404 (0.298)
386 (0.267)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   G-Allele A-Allele G/G
(frequency)		 G/A
(frequency)		 A/A
(frequency)
 Caucasian
rs1952699 Norway MS
CTR		 0.02
0.02		 0.98
0.98		 0 (0.000)
1 (0.001)		 51 (0.038)
57 (0.039)		 1304 (0.962)
1389 (0.960)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   C-Allele T-Allele C/C
(frequency)		 C/T
(frequency)		 T/T
(frequency)
 Caucasian
rs2150127 Norway MS
CTR		 0.03
0.02		 0.97
0.98		 1 (0.001)
1 (0.001)		 71 (0.052)
70 (0.048)		 1283 (0.947)
1375 (0.951)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   C-Allele G-Allele C/C
(frequency)		 C/G
(frequency)		 G/G
(frequency)
 Caucasian
rs3764127 Norway MS
CTR		 0.03
0.02		 0.97
0.98		 1 (0.001)
1 (0.001)		 81 (0.060)
65 (0.045)		 1272 (0.939)
1380 (0.954)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   G-Allele A-Allele G/G
(frequency)		 G/A
(frequency)		 A/A
(frequency)
 Caucasian
rs4590994 Norway MS
CTR		 0.04
0.03		 0.96
0.97		 2 (0.001)
2 (0.001)		 99 (0.073)
95 (0.066)		 1254 (0.925)
1349 (0.933)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   G-Allele A-Allele G/G
(frequency)		 G/A
(frequency)		 A/A
(frequency)
 Caucasian
rs7331448 Norway MS
CTR		 0.04
0.03		 0.96
0.97		 2 (0.001)
1 (0.001)		 104 (0.077)
90 (0.062)		 1249 (0.922)
1355 (0.937)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   T-Allele C-Allele T/T
(frequency)		 T/C
(frequency)		 C/C
(frequency)
 Caucasian
rs7987964 Norway MS
CTR		 0.36
0.34		 0.64
0.66		 174 (0.128)
165 (0.114)		 623 (0.460)
647 (0.447)		 558 (0.412)
634 (0.438)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   C-Allele T-Allele C/C
(frequency)		 C/T
(frequency)		 T/T
(frequency)
 Caucasian
rs7993501 Norway MS
CTR		 0.36
0.34		 0.64
0.66		 175 (0.129)
165 (0.114)		 624 (0.460)
647 (0.447)		 557 (0.411)
634 (0.438)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   G-Allele A-Allele G/G
(frequency)		 G/A
(frequency)		 A/A
(frequency)
 Caucasian
rs9524078 Norway MS
CTR		 0.30
0.32		 0.70
0.68		 119 (0.088)
148 (0.102)		 565 (0.417)
629 (0.435)		 672 (0.496)
669 (0.463)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   T-Allele C-Allele T/T
(frequency)		 T/C
(frequency)		 C/C
(frequency)
 Caucasian
rs9524079 Norway MS
CTR		 0.30
0.30		 0.70
0.70		 120 (0.088)
129 (0.089)		 566 (0.417)
606 (0.419)		 670 (0.494)
711 (0.492)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   A-Allele G-Allele A/A
(frequency)		 A/G
(frequency)		 G/G
(frequency)
 Caucasian
rs9524260 Norway MS
CTR		 0.39
0.41		 0.61
0.59		 209 (0.154)
249 (0.172)		 646 (0.477)
702 (0.485)		 499 (0.369)
495 (0.342)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   G-Allele A-Allele G/G
(frequency)		 G/A
(frequency)		 A/A
(frequency)
 Caucasian
rs9556282 Norway MS
CTR		 0.12
0.13		 0.88
0.87		 20 (0.015)
23 (0.016)		 292 (0.216)
316 (0.219)		 1042 (0.770)
1107 (0.766)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   T-Allele C-Allele T/T
(frequency)		 T/C
(frequency)		 C/C
(frequency)
 Caucasian
rs9561314 Norway MS
CTR		 0.12
0.13		 0.88
0.87		 21 (0.016)
23 (0.016)		 296 (0.219)
318 (0.220)		 1037 (0.766)
1105 (0.764)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   A-Allele G-Allele A/A
(frequency)		 A/G
(frequency)		 G/G
(frequency)
 Caucasian
rs9589817 Norway MS
CTR		 0.04
0.03		 0.96
0.97		 2 (0.001)
1 (0.001)		 102 (0.075)
90 (0.062)		 1251 (0.923)
1355 (0.937)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   G-Allele T-Allele G/G
(frequency)		 G/T
(frequency)		 T/T
(frequency)
 Caucasian
rs9589823 Norway MS
CTR		 0.02
0.02		 0.98
0.98		 1 (0.001)
0 (0.000)		 53 (0.039)
48 (0.033)		 1301 (0.960)
1397 (0.967)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
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Top Results Details
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MSGene Stats
Studies: 789
Genes: 809
Polymorphisms: 2907
Meta-analyses: 324
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