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MSGene - Polymorphism Details
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 Study: Kim, 2009
 Gene: CYP7A1  (CP7A; CYP7; CYPVII; MGC126826; MGC138389)  Entrez Gene
 Protein: cytochrome P450, family 7, subfamily A, polypeptide 1  (cholesterol 7-alpha-hydroxylase; cholesterol 7-alpha-monooxygenase; cytochrome P450 7A1; cytochrome P450, subfamily VIIA polypeptide 1)  ProteinLink
 Chromosome: 8   (View: 1  2  3  4  5  6  7  8  9  10  11  12  13  14  15  16  17  18  19  20  21  22  X  Y  MT)
 Status: Updated 7 April 2010
Meta-Analysis     Gene Overview
Total number of polymorphisms investigated by this study: 11

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)
Population   T-Allele C-Allele T/T
(frequency)
T/C
(frequency)
C/C
(frequency)
 Asian
rs11786580 Korea MS
CTR
0.11
0.10
0.89
0.90
1 (0.014)
2 (0.008)
13 (0.183)
44 (0.183)
57 (0.803)
194 (0.808)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)
Population   A-Allele G-Allele A/A
(frequency)
A/G
(frequency)
G/G
(frequency)
 Asian
rs1457043 Korea MS
CTR
0.41
0.43
0.59
0.57
12 (0.171)
44 (0.183)
34 (0.486)
118 (0.492)
24 (0.343)
78 (0.325)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)
Population   G-Allele A-Allele G/G
(frequency)
G/A
(frequency)
A/A
(frequency)
 Asian
rs3747809 Korea MS
CTR
0.06
0.05
0.94
0.95
0 (0.000)
1 (0.004)
8 (0.113)
23 (0.096)
63 (0.887)
216 (0.900)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)
Population   G-Allele T-Allele G/G
(frequency)
G/T
(frequency)
T/T
(frequency)
 Asian
rs3808607 Korea MS
CTR
0.47
0.48
0.53
0.52
16 (0.225)
56 (0.233)
35 (0.493)
120 (0.500)
20 (0.282)
64 (0.267)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)
Population   C-Allele T-Allele C/C
(frequency)
C/T
(frequency)
T/T
(frequency)
 Asian
rs4738687 Korea MS
CTR
0.31
0.33
0.69
0.67
7 (0.099)
26 (0.108)
30 (0.423)
106 (0.442)
34 (0.479)
108 (0.450)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)
Population   G-Allele A-Allele G/G
(frequency)
G/A
(frequency)
A/A
(frequency)
 Asian
rs6997473 Korea MS
CTR
0.37
0.32
0.63
0.68
10 (0.141)
24 (0.100)
33 (0.465)
104 (0.433)
28 (0.394)
112 (0.467)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)
Population   A-Allele C-Allele A/A
(frequency)
A/C
(frequency)
C/C
(frequency)
 Asian
rs8192870 Korea MS
CTR
0.15
0.21
0.85
0.79
2 (0.028)
11 (0.046)
17 (0.239)
81 (0.338)
52 (0.732)
148 (0.617)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)
Population   G-Allele A-Allele G/G
(frequency)
G/A
(frequency)
A/A
(frequency)
 Asian
rs8192874 (N233S) Korea MS
CTR
0.03
0.02
0.97
0.98
0 (0.000)
0 (0.000)
4 (0.056)
9 (0.038)
67 (0.944)
231 (0.963)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)
Population   A-Allele G-Allele A/A
(frequency)
A/G
(frequency)
G/G
(frequency)
 Asian
rs8192875 (D347N) Korea MS
CTR
0.06
0.03
0.94
0.97
0 (0.000)
0 (0.000)
8 (0.113)
14 (0.058)
63 (0.887)
226 (0.942)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)
Population   C-Allele T-Allele C/C
(frequency)
C/T
(frequency)
T/T
(frequency)
 Asian
rs8192877 Korea MS
CTR
0.06
0.05
0.94
0.95
0 (0.000)
1 (0.004)
8 (0.114)
21 (0.088)
62 (0.886)
218 (0.908)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)
Population   A-Allele G-Allele A/A
(frequency)
A/G
(frequency)
G/G
(frequency)
 Asian
rs8192879 Korea MS
CTR
0.27
0.27
0.73
0.73
5 (0.070)
18 (0.075)
28 (0.394)
95 (0.396)
38 (0.535)
127 (0.529)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
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MSGene Stats
Studies: 789
Genes: 809
Polymorphisms: 2907
Meta-analyses: 324
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