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MSGene - Polymorphism Details
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 Study: Sulonen, 2009
 Gene: TREM2  (TREM-2; Trem2a; Trem2b; Trem2c)  Entrez Gene    View on AlzGene   View on SZGene
 Protein: triggering receptor expressed on myeloid cells 2  (triggering receptor expressed on monocytes 2; triggering receptor expressed on myeloid cells 2a)  ProteinLink
 Chromosome: 6   (View: 1  2  3  4  5  6  7  8  9  10  11  12  13  14  15  16  17  18  19  20  21  22  X  Y  MT)
 Status: Updated 25 November 2011
Meta-Analysis     Gene Overview
Total number of polymorphisms investigated by this study: 15

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)
Population   G-Allele A-Allele G/G
(frequency)
G/A
(frequency)
A/A
(frequency)
 Caucasian
rs10456499 Finland MS
CTR
0.40
0.40
0.60
0.60
145 (0.160)
216 (0.160)
434 (0.480)
647 (0.480)
326 (0.360)
485 (0.360)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)
Population   C-Allele T-Allele C/C
(frequency)
C/T
(frequency)
T/T
(frequency)
 Caucasian
rs11964090 Finland MS
CTR
0.11
0.09
0.89
0.91
11 (0.012)
11 (0.008)
177 (0.196)
221 (0.164)
717 (0.792)
1116 (0.828)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)
Population   A-Allele G-Allele A/A
(frequency)
A/G
(frequency)
G/G
(frequency)
 Caucasian
rs11968153 Finland MS
CTR
0.10
0.09
0.90
0.91
9 (0.010)
11 (0.008)
163 (0.180)
221 (0.164)
733 (0.810)
1116 (0.828)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)
Population   A-Allele C-Allele A/A
(frequency)
A/C
(frequency)
C/C
(frequency)
 Caucasian
rs11969526 Finland MS
CTR
0.10
0.10
0.90
0.90
9 (0.010)
13 (0.010)
163 (0.180)
243 (0.180)
733 (0.810)
1092 (0.810)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)
Population   C-Allele T-Allele C/C
(frequency)
C/T
(frequency)
T/T
(frequency)
 Caucasian
rs6905117 Finland MS
CTR
0.11
0.10
0.89
0.90
11 (0.012)
13 (0.010)
177 (0.196)
243 (0.180)
717 (0.792)
1092 (0.810)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)
Population   T-Allele G-Allele T/T
(frequency)
T/G
(frequency)
G/G
(frequency)
 Caucasian
rs6918289 Finland MS
CTR
0.10
0.09
0.90
0.91
9 (0.010)
11 (0.008)
163 (0.180)
221 (0.164)
733 (0.810)
1116 (0.828)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)
Population   A-Allele G-Allele A/A
(frequency)
A/G
(frequency)
G/G
(frequency)
 Caucasian
rs6923053 Finland MS
CTR
0.11
0.10
0.89
0.90
11 (0.012)
13 (0.010)
177 (0.196)
243 (0.180)
717 (0.792)
1092 (0.810)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)
Population   G-Allele A-Allele G/G
(frequency)
G/A
(frequency)
A/A
(frequency)
 Caucasian
rs6924867 Finland MS
CTR
0.11
0.09
0.89
0.91
11 (0.012)
11 (0.008)
177 (0.196)
221 (0.164)
717 (0.792)
1116 (0.828)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)
Population   A-Allele G-Allele A/A
(frequency)
A/G
(frequency)
G/G
(frequency)
 Caucasian
rs6926018 Finland MS
CTR
0.07
0.07
0.93
0.93
4 (0.004)
7 (0.005)
118 (0.130)
175 (0.130)
783 (0.865)
1166 (0.865)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)
Population   T-Allele C-Allele T/T
(frequency)
T/C
(frequency)
C/C
(frequency)
 Caucasian
rs6926079 Finland MS
CTR
0.10
0.09
0.90
0.91
9 (0.010)
11 (0.008)
163 (0.180)
221 (0.164)
733 (0.810)
1116 (0.828)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)
Population   C-Allele T-Allele C/C
(frequency)
C/T
(frequency)
T/T
(frequency)
 Caucasian
rs722442 Finland MS
CTR
0.35
0.33
0.65
0.67
111 (0.123)
147 (0.109)
412 (0.455)
596 (0.442)
382 (0.422)
605 (0.449)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)
Population   A-Allele G-Allele A/A
(frequency)
A/G
(frequency)
G/G
(frequency)
 Caucasian
rs7748777 Finland MS
CTR
0.46
0.43
0.54
0.57
191 (0.211)
249 (0.185)
450 (0.497)
661 (0.490)
264 (0.292)
438 (0.325)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)
Population   T-Allele C-Allele T/T
(frequency)
T/C
(frequency)
C/C
(frequency)
 Caucasian
rs7759295 Finland MS
CTR
0.09
0.10
0.91
0.90
7 (0.008)
13 (0.010)
148 (0.164)
243 (0.180)
750 (0.829)
1092 (0.810)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)
Population   T-Allele C-Allele T/T
(frequency)
T/C
(frequency)
C/C
(frequency)
 Caucasian
rs878998 Finland MS
CTR
0.10
0.09
0.90
0.91
9 (0.010)
11 (0.008)
163 (0.180)
221 (0.164)
733 (0.810)
1116 (0.828)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)
Population   C-Allele A-Allele C/C
(frequency)
C/A
(frequency)
A/A
(frequency)
 Caucasian
rs9357347 Finland MS
CTR
0.35
0.32
0.65
0.68
111 (0.123)
138 (0.102)
412 (0.455)
587 (0.435)
382 (0.422)
623 (0.462)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
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MSGene Stats
Studies: 789
Genes: 809
Polymorphisms: 2907
Meta-analyses: 324
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