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MSGene - Polymorphism Details
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 Study: Vandevyver, 1994
 Gene: TAP2  (DAAP-57C1.2; ABC18; ABCB3; APT2; D6S217E; PSF2; RING11)  Entrez Gene    View on AlzGene   View on SZGene
 Protein: transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)  (ABC transporter, MHC 2; ATP-binding cassette sub-family B member 3; ATP-binding cassette, sub-family B (MDR/TAP), member 3; PSF-2; antigen peptide transporter 2; peptide supply factor 2; peptide transporter PSF2; peptide transporter TAP2; peptide transporter involved in antigen processing 2; really interesting new gene 11 protein; transporter 2, ABC (ATP binding cassette); transporter 2, ATP-binding cassette, sub-family B)  ProteinLink
 Chromosome: 6   (View: 1  2  3  4  5  6  7  8  9  10  11  12  13  14  15  16  17  18  19  20  21  22  X  Y  MT)
 Status: Updated 25 November 2011
Meta-Analysis     Gene Overview
Total number of polymorphisms investigated by this study: 3

Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   A-Allele G-Allele A/A
(frequency)
A/G
(frequency)
G/G
(frequency)
 Caucasian
rs1800454 (V379I) Belgium MS
CTR
0.10
0.15
0.90
0.85
1 (0.016)
1 (0.016)
10 (0.161)
17 (0.274)
51 (0.823)
44 (0.710)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   C-Allele T-Allele C/C
(frequency)
C/T
(frequency)
T/T
(frequency)
 Caucasian
rs241448 (Q687Stop) Belgium MS
CTR
0.24
0.19
0.76
0.81
4 (0.065)
0 (0.000)
22 (0.355)
24 (0.387)
36 (0.581)
38 (0.613)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   Arg-Allele Thr-Allele Arg/Arg
(frequency)
Arg/Thr
(frequency)
Thr/Thr
(frequency)
 Caucasian
rs111033561 (A665T) Belgium MS
CTR
0.46
0.48
0.54
0.52
0 (0.000)
2 (0.032)
57 (0.919)
55 (0.887)
5 (0.081)
5 (0.081)
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MSGene Recent Updates
MSGene Top Results
Top Results Details
1. HLA-DRB1
2. IL2RA
3. IL7R
4. TAGAP
5. CLEC16A
6. EVI5
7. GWA_16q24.1
8. GWA_5p13.1
9. TTC34
10. AHI1   
[see more]
MSGene Stats
Studies: 789
Genes: 809
Polymorphisms: 2907
Meta-analyses: 324
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