MSGene

MSGene - Polymorphism Details

Study:

Middleton,1994

Gene:

TAP2 (DAAP-57C1.2; ABC18; ABCB3; APT2; D6S217E; PSF2; RING11)

View on AlzGene View on SZGene

Protein:

transporter 2, ATP-binding cassette, sub-family B (MDR/TAP) (ABC transporter, MHC 2; ATP-binding cassette sub-family B member 3; ATP-binding cassette, sub-family B (MDR/TAP), member 3; PSF-2; antigen peptide transporter 2; peptide supply factor 2; peptide transporter PSF2; peptide transporter TAP2; peptide transporter involved in antigen processing 2; really interesting new gene 11 protein; transporter 2, ABC (ATP binding cassette); transporter 2, ATP-binding cassette, sub-family B)

Chromosome:

6 (View: 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 X Y MT)

Status:

Updated 25 November 2011

Total number of polymorphisms investigated by this study: 3

Case-Control Studies (by ethnic group)
					Genotypes
Polymorphism ID# (Link to NCBI)	Population		A-Allele	G-Allele	A/A (frequency)	A/G (frequency)	G/G (frequency)
Caucasian
rs1800454 (V379I)	UK (Northern Ireland)	MS CTR	0.08 0.21	0.92 0.79	1 (0.021) 8 (0.053)	6 (0.125) 48 (0.320)	41 (0.854) 94 (0.627)

Case-Control Studies (by ethnic group)
					Genotypes
Polymorphism ID# (Link to NCBI)	Population		Arg-Allele	Thr-Allele	Arg/Arg (frequency)	Arg/Thr (frequency)	Thr/Thr (frequency)
Caucasian
rs111033561 (A665T)	UK (Northern Ireland)	MS CTR	0.18 0.25	0.82 0.75	0 (0.000) 6 (0.040)	17 (0.354) 63 (0.420)	31 (0.646) 81 (0.540)

Case-Control Studies (by ethnic group)
					Genotypes
Polymorphism ID# (Link to NCBI)	Population		A-Allele	G-Allele	A/A (frequency)	A/G (frequency)	G/G (frequency)
Caucasian
rs2228396 (A565T)	UK (Northern Ireland)	MS CTR	0.05 0.16	0.95 0.84	0 (0.000) 2 (0.013)	5 (0.104) 44 (0.293)	43 (0.896) 104 (0.693)

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