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MSGene - Polymorphism Details
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 Study: Moins-Teisserenc, 1995
 Gene: TAP2  (DAAP-57C1.2; ABC18; ABCB3; APT2; D6S217E; PSF2; RING11)  Entrez Gene    View on AlzGene   View on SZGene
 Protein: transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)  (ABC transporter, MHC 2; ATP-binding cassette sub-family B member 3; ATP-binding cassette, sub-family B (MDR/TAP), member 3; PSF-2; antigen peptide transporter 2; peptide supply factor 2; peptide transporter PSF2; peptide transporter TAP2; peptide transporter involved in antigen processing 2; really interesting new gene 11 protein; transporter 2, ABC (ATP binding cassette); transporter 2, ATP-binding cassette, sub-family B)  ProteinLink
 Chromosome: 6   (View: 1  2  3  4  5  6  7  8  9  10  11  12  13  14  15  16  17  18  19  20  21  22  X  Y  MT)
 Status: Updated 25 November 2011
Meta-Analysis     Gene Overview
Total number of polymorphisms investigated by this study: 6

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)
Population   A-Allele G-Allele A/A
(frequency)
A/G
(frequency)
G/G
(frequency)
 Caucasian
rs1800454 (V379I) France MS
CTR
0.18
0.17
0.82
0.83
3 (0.029)
1 (0.024)
31 (0.301)
12 (0.293)
69 (0.670)
28 (0.683)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)
Population   C-Allele T-Allele C/C
(frequency)
C/T
(frequency)
T/T
(frequency)
 Caucasian
rs241448 (Q687Stop) France MS
CTR
0.24
0.27
0.76
0.73
6 (0.058)
3 (0.073)
38 (0.369)
16 (0.390)
59 (0.573)
22 (0.537)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)
Population   Arg-Allele Thr-Allele Arg/Arg
(frequency)
Arg/Thr
(frequency)
Thr/Thr
(frequency)
 Caucasian
rs111033561 (A665T) France MS
CTR
0.24
0.27
0.76
0.73
6 (0.058)
3 (0.073)
38 (0.369)
16 (0.390)
59 (0.573)
22 (0.537)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)
Population   A-Allele G-Allele A/A
(frequency)
A/G
(frequency)
G/G
(frequency)
 Caucasian
rs2228396 (A565T) France MS
CTR
0.08
0.28
0.92
0.72
1 (0.010)
0 (0.000)
14 (0.136)
41 (0.554)
88 (0.854)
33 (0.446)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   T-Allele G-Allele T/T
(frequency)
T/G
(frequency)
G/G
(frequency)
 Caucasian
rs2228397 (1158G/T-codon-386) France MS
CTR
0.36
0.11
0.64
0.89
18 (0.173)
0 (0.000)
38 (0.365)
12 (0.218)
48 (0.462)
43 (0.782)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   T-Allele C-Allele T/T
(frequency)
T/C
(frequency)
C/C
(frequency)
 Caucasian
rs4148876 (R651C) France MS
CTR
-
-
-
-
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
(-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details).
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MSGene Stats
Studies: 789
Genes: 809
Polymorphisms: 2907
Meta-analyses: 324
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