MSGene

MSGene - Polymorphism Details

Study:

Grabmer, 2010

Gene:

HAVCR1 (HAVCR; HAVCR-1; KIM-1; KIM1; TIM-1; TIM1; TIMD1)

Protein:

hepatitis A virus cellular receptor 1 (T cell immunoglobin domain and mucin domain protein 1; T-cell immunoglobulin and mucin domain-containing protein 1; T-cell membrane protein 1; TIM; TIMD-1; kidney injury molecule 1)

Chromosome:

5 (View: 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 X Y MT)

Status:

Updated 25 November 2011

Total number of polymorphisms investigated by this study: 10

Case-Control Studies (by ethnic group)
					Genotypes
Polymorphism ID# (Link to NCBI)	Population		C-Allele	T-Allele	C/C (frequency)	C/T (frequency)	T/T (frequency)
Caucasian
rs12522248 (TIM1-e4 619)	Austria	MS CTR	0.29 0.25	0.71 0.75	26 (0.096) 11 (0.040)	106 (0.390) 115 (0.423)	140 (0.515) 146 (0.537)

Case-Control Studies (by ethnic group)
					Genotypes
Polymorphism ID# (Link to NCBI)	Population		T-Allele	C-Allele	T/T (frequency)	T/C (frequency)	C/C (frequency)
Caucasian
rs1553316 (TIM1-e4 536)	Austria	MS CTR	0.18 0.17	0.82 0.83	7 (0.026) 8 (0.029)	84 (0.309) 77 (0.283)	181 (0.665) 187 (0.688)

Case-Control Studies (by ethnic group)
					Genotypes
Polymorphism ID# (Link to NCBI)	Population		C-Allele	G-Allele	C/C (frequency)	C/G (frequency)	G/G (frequency)
Caucasian
rs1553318 (TIM1-i4 49)	Austria	MS CTR	0.39 0.40	0.61 0.60	41 (0.151) 40 (0.147)	132 (0.485) 140 (0.515)	99 (0.364) 92 (0.338)

Case-Control Studies (by ethnic group)
					Genotypes
Polymorphism ID# (Link to NCBI)	Population		C-Allele	T-Allele	C/C (frequency)	C/T (frequency)	T/T (frequency)
Caucasian
rs2277025 (TIM1-i7 4163)	Austria	MS CTR	0.36 0.37	0.64 0.63	40 (0.147) 31 (0.114)	115 (0.423) 138 (0.507)	117 (0.430) 103 (0.379)

Case-Control Studies (by ethnic group)
					Genotypes
Polymorphism ID# (Link to NCBI)	Population		G-Allele	A-Allele	G/G (frequency)	G/A (frequency)	A/A (frequency)
Caucasian
rs2279804 (TIM1-i4 168)	Austria	MS CTR	0.49 0.52	0.51 0.48	75 (0.276) 72 (0.265)	119 (0.438) 138 (0.507)	78 (0.287) 62 (0.228)

Case-Control Studies (by ethnic group)
					Genotypes
Polymorphism ID# (Link to NCBI)	Population		A-Allele	G-Allele	A/A (frequency)	A/G (frequency)	G/G (frequency)
Caucasian
rs34333511 (TIM1-232)	Austria	MS CTR	0.48 0.48	0.52 0.52	60 (0.221) 60 (0.221)	143 (0.526) 142 (0.522)	69 (0.254) 70 (0.257)

Case-Control Studies (by ethnic group)
					Genotypes
Polymorphism ID# (Link to NCBI)	Population		C-Allele	G-Allele	C/C (frequency)	C/G (frequency)	G/G (frequency)
Caucasian
rs41297577 (TIM1-1549)	Austria	MS CTR	0.17 0.14	0.83 0.86	8 (0.029) 2 (0.007)	77 (0.283) 74 (0.272)	187 (0.688) 196 (0.721)

Case-Control Studies (by ethnic group)
					Genotypes
Polymorphism ID# (Link to NCBI)	Population		A-Allele	G-Allele	A/A (frequency)	A/G (frequency)	G/G (frequency)
Caucasian
rs41297579 (TIM1-1454)	Austria	MS CTR	0.15 0.12	0.85 0.88	6 (0.022) 2 (0.007)	69 (0.254) 63 (0.232)	197 (0.724) 207 (0.761)

Case-Control Studies (by ethnic group)
					Genotypes
Polymorphism ID# (Link to NCBI)	Population		A-Allele	G-Allele	A/A (frequency)	A/G (frequency)	G/G (frequency)
Caucasian
rs7702920 (TIM1-1637)	Austria	MS CTR	0.39 0.35	0.61 0.65	46 (0.169) 35 (0.129)	122 (0.449) 120 (0.441)	104 (0.382) 117 (0.430)

Case-Control Studies (by ethnic group)
					Genotypes
Polymorphism ID# (Link to NCBI)	Population		G-Allele	C-Allele	G/G (frequency)	G/C (frequency)	C/C (frequency)
Caucasian
rs9313422 (TIM1-416)	Austria	MS CTR	0.48 0.42	0.52 0.58	59 (0.217) 50 (0.184)	141 (0.518) 128 (0.471)	72 (0.265) 94 (0.346)

Print this page

Email this page

MSDF RSS

Text size

Share & Bookmark

MSGene Recent Updates

MSGene Top Results