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MSGene - Polymorphism Details
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 Study: Palacios, 2008
 Gene: CTLA4  (CD; CD152; CELIAC3; CTLA-4; GSE; IDDM12)  Entrez Gene    View on SZGene
 Protein: cytotoxic T-lymphocyte-associated protein 4  (celiac disease 3; cytotoxic T-lymphocyte-associated antigen 4; cytotoxic T-lymphocyte-associated serine esterase-4; ligand and transmembrane spliced cytotoxic T lymphocyte associated antigen 4)  ProteinLink
 Chromosome: 2   (View: 1  2  3  4  5  6  7  8  9  10  11  12  13  14  15  16  17  18  19  20  21  22  X  Y  MT)
 Status: Updated 25 November 2011
Meta-Analysis     Gene Overview
Total number of polymorphisms investigated by this study: 17

Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)		 Population   G-Allele T-Allele G/G
(frequency)		 G/T
(frequency)		 T/T
(frequency)
 Caucasian
rs11571302 (10242G/T) Spain, Portugal MS
CTR		 0.40
0.39		 0.60
0.61		 24 (0.164)
23 (0.151)		 70 (0.479)
73 (0.480)		 52 (0.356)
56 (0.368)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)		 Population   G-Allele A-Allele G/G
(frequency)		 G/A
(frequency)		 A/A
(frequency)
 Caucasian
rs231775 (49A/G) Spain, Portugal MS
CTR		 0.27
0.27		 0.73
0.73		 11 (0.075)
11 (0.072)		 57 (0.390)
61 (0.401)		 78 (0.534)
80 (0.526)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)		 Population   A-Allele G-Allele A/A
(frequency)		 A/G
(frequency)		 G/G
(frequency)
 Caucasian
rs3087243 (CT60) Spain, Portugal MS
CTR		 0.55
0.56		 0.45
0.44		 45 (0.308)
47 (0.309)		 72 (0.493)
75 (0.493)		 29 (0.199)
30 (0.197)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)		 Population   T-Allele C-Allele T/T
(frequency)		 T/C
(frequency)		 C/C
(frequency)
 Caucasian
rs5742909 (-318C/T) Spain, Portugal MS
CTR		 0.09
0.08		 0.91
0.92		 1 (0.007)
1 (0.007)		 25 (0.171)
23 (0.151)		 120 (0.822)
128 (0.842)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)		 Population   G-Allele A-Allele G/G
(frequency)		 G/A
(frequency)		 A/A
(frequency)
 Caucasian
rs4553808 (-1661) Spain, Portugal MS
CTR		 0.23
0.20		 0.77
0.80		 8 (0.055)
6 (0.039)		 52 (0.356)
50 (0.329)		 86 (0.589)
96 (0.632)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)		 Population   C-Allele T-Allele C/C
(frequency)		 C/T
(frequency)		 T/T
(frequency)
 Caucasian
rs733618 (-1722) Spain, Portugal MS
CTR		 0.07
0.05		 0.93
0.95		 1 (0.007)
0 (0.000)		 17 (0.116)
14 (0.092)		 128 (0.877)
138 (0.908)


Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   C-Allele A-Allele C/C
(frequency)		 C/A
(frequency)		 A/A
(frequency)
 Caucasian
rs10197010 (7482) Spain, Portugal MS
CTR		 0.16
0.13		 0.84
0.87		 4 (0.027)
3 (0.020)		 39 (0.267)
35 (0.229)		 103 (0.705)
115 (0.752)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   G-Allele C-Allele G/G
(frequency)		 G/C
(frequency)		 C/C
(frequency)
 Caucasian
rs10932025 (12131) Spain, Portugal MS
CTR		 0.19
0.15		 0.81
0.85		 5 (0.034)
3 (0.020)		 45 (0.308)
39 (0.257)		 96 (0.658)
110 (0.724)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   T-Allele C-Allele T/T
(frequency)		 T/C
(frequency)		 C/C
(frequency)
 Caucasian
rs11571297 (12310C/T) Spain, Portugal MS
CTR		 0.42
0.37		 0.58
0.63		 26 (0.178)
20 (0.132)		 71 (0.486)
71 (0.467)		 49 (0.336)
61 (0.401)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   T-Allele C-Allele T/T
(frequency)		 T/C
(frequency)		 C/C
(frequency)
 Caucasian
rs11571315 (-1765) Spain, Portugal MS
CTR		 0.30
0.31		 0.70
0.69		 13 (0.089)
15 (0.099)		 61 (0.418)
65 (0.428)		 72 (0.493)
72 (0.474)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   G-Allele A-Allele G/G
(frequency)		 G/A
(frequency)		 A/A
(frequency)
 Caucasian
rs11571316 (-1577A/G) Spain, Portugal MS
CTR		 0.41
0.40		 0.59
0.60		 25 (0.171)
24 (0.158)		 70 (0.479)
73 (0.480)		 51 (0.349)
55 (0.362)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   T-Allele C-Allele T/T
(frequency)		 T/C
(frequency)		 C/C
(frequency)
 Caucasian
rs11571317 (-658C/T) Spain, Portugal MS
CTR		 0.12
0.12		 0.88
0.88		 2 (0.014)
2 (0.013)		 32 (0.219)
33 (0.217)		 112 (0.767)
117 (0.770)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   A-Allele G-Allele A/A
(frequency)		 A/G
(frequency)		 G/G
(frequency)
 Caucasian
rs11571319 (6249) Spain, Portugal MS
CTR		 0.18
0.14		 0.82
0.86		 5 (0.034)
3 (0.020)		 43 (0.295)
38 (0.250)		 98 (0.671)
111 (0.730)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   G-Allele A-Allele G/G
(frequency)		 G/A
(frequency)		 A/A
(frequency)
 Caucasian
rs231723 (7092) Spain, Portugal MS
CTR		 0.26
0.25		 0.74
0.75		 10 (0.068)
9 (0.059)		 57 (0.390)
57 (0.375)		 79 (0.541)
86 (0.566)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   A-Allele G-Allele A/A
(frequency)		 A/G
(frequency)		 G/G
(frequency)
 Caucasian
rs231725 (7982) Spain, Portugal MS
CTR		 0.22
0.23		 0.78
0.77		 7 (0.048)
8 (0.053)		 51 (0.349)
54 (0.355)		 88 (0.603)
90 (0.592)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   T-Allele C-Allele T/T
(frequency)		 T/C
(frequency)		 C/C
(frequency)
 Caucasian
rs231726 (8173C/T) Spain, Portugal MS
CTR		 0.26
0.26		 0.74
0.74		 10 (0.068)
10 (0.066)		 57 (0.390)
59 (0.388)		 79 (0.541)
83 (0.546)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   G-Allele A-Allele G/G
(frequency)		 G/A
(frequency)		 A/A
(frequency)
 Caucasian
rs7565213 (10717A/G) Spain, Portugal MS
CTR		 0.45
0.39		 0.55
0.61		 29 (0.199)
23 (0.151)		 73 (0.500)
72 (0.474)		 44 (0.301)
57 (0.375)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
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MSGene Stats
Studies: 789
Genes: 809
Polymorphisms: 2907
Meta-analyses: 324
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