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MSGene - Polymorphism Details
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 Study: Kemppinen, 2009
 Gene: MYO9B (CELIAC4; MYR5)   View on SZGene
 Protein: myosin IXB(MYO9B variant protein; celiac disease 4)
 Chromosome: 19   (View: 1  2  3  4  5  6  7  8  9  10  11  12  13  14  15  16  17  18  19  20  21  22  X  Y  MT)
 Status: Updated 25 November 2011
Meta-Analysis     Gene Overview
Total number of polymorphisms investigated by this study: 18

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   C-Allele T-Allele C/C
(frequency)		 C/T
(frequency)		 T/T
(frequency)
 Caucasian
rs10423232 Denmark MS
CTR		 0.17
0.20		 0.83
0.80		 14 (0.029)
19 (0.041)		 138 (0.283)
149 (0.318)		 336 (0.689)
300 (0.641)
rs10423232 Finland MS
CTR		 0.19
0.16		 0.81
0.84		 32 (0.036)
34 (0.026)		 277 (0.308)
356 (0.269)		 590 (0.656)
935 (0.706)
rs10423232 Norway MS
CTR		 0.18
0.15		 0.82
0.85		 11 (0.032)
8 (0.022)		 103 (0.296)
94 (0.255)		 234 (0.672)
267 (0.724)
rs10423232 Sweden MS
CTR		 0.17
0.18		 0.83
0.82		 20 (0.029)
21 (0.033)		 193 (0.282)
188 (0.294)		 472 (0.689)
430 (0.673)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   G-Allele C-Allele G/G
(frequency)		 G/C
(frequency)		 C/C
(frequency)
 Caucasian
rs11673417 Denmark MS
CTR		 0.01
0.02		 0.99
0.98		 0 (0.000)
0 (0.000)		 10 (0.020)
19 (0.041)		 478 (0.980)
449 (0.959)
rs11673417 Finland MS
CTR		 0.04
0.04		 0.96
0.96		 1 (0.001)
2 (0.002)		 69 (0.077)
102 (0.077)		 829 (0.922)
1221 (0.922)
rs11673417 Norway MS
CTR		 0.02
0.02		 0.98
0.98		 0 (0.000)
0 (0.000)		 14 (0.040)
15 (0.041)		 334 (0.960)
354 (0.959)
rs11673417 Sweden MS
CTR		 0.02
0.02		 0.98
0.98		 0 (0.000)
0 (0.000)		 27 (0.039)
25 (0.039)		 658 (0.961)
614 (0.961)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   A-Allele C-Allele A/A
(frequency)		 A/C
(frequency)		 C/C
(frequency)
 Caucasian
rs12986130 Denmark MS
CTR		 0.34
0.33		 0.66
0.67		 56 (0.115)
51 (0.109)		 219 (0.449)
207 (0.442)		 213 (0.436)
210 (0.449)
rs12986130 Finland MS
CTR		 0.46
0.45		 0.54
0.55		 190 (0.211)
268 (0.202)		 447 (0.497)
656 (0.495)		 262 (0.291)
401 (0.303)
rs12986130 Norway MS
CTR		 0.35
0.39		 0.65
0.61		 43 (0.124)
56 (0.152)		 158 (0.454)
176 (0.477)		 147 (0.422)
137 (0.371)
rs12986130 Sweden MS
CTR		 0.39
0.36		 0.61
0.64		 104 (0.152)
83 (0.130)		 326 (0.476)
294 (0.460)		 255 (0.372)
262 (0.410)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   A-Allele C-Allele A/A
(frequency)		 A/C
(frequency)		 C/C
(frequency)
 Caucasian
rs1457092 Denmark MS
CTR		 0.37
0.35		 0.63
0.65		 67 (0.137)
57 (0.122)		 227 (0.465)
213 (0.455)		 194 (0.398)
198 (0.423)
rs1457092 Finland MS
CTR		 0.40
0.41		 0.60
0.59		 144 (0.160)
223 (0.168)		 431 (0.479)
641 (0.484)		 324 (0.360)
461 (0.348)
rs1457092 Norway MS
CTR		 0.34
0.34		 0.66
0.66		 40 (0.115)
43 (0.117)		 156 (0.448)
165 (0.447)		 152 (0.437)
161 (0.436)
rs1457092 Sweden MS
CTR		 0.37
0.36		 0.63
0.64		 94 (0.137)
83 (0.130)		 319 (0.466)
294 (0.460)		 272 (0.397)
262 (0.410)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   T-Allele C-Allele T/T
(frequency)		 T/C
(frequency)		 C/C
(frequency)
 Caucasian
rs17533868 Denmark MS
CTR		 0.04
0.04		 0.96
0.96		 1 (0.002)
1 (0.002)		 37 (0.076)
36 (0.077)		 450 (0.922)
431 (0.921)
rs17533868 Finland MS
CTR		 0.04
0.03		 0.96
0.97		 1 (0.001)
1 (0.001)		 69 (0.077)
77 (0.058)		 829 (0.922)
1247 (0.941)
rs17533868 Norway MS
CTR		 0.04
0.02		 0.96
0.98		 1 (0.003)
0 (0.000)		 27 (0.077)
15 (0.041)		 321 (0.920)
354 (0.959)
rs17533868 Sweden MS
CTR		 0.03
0.03		 0.97
0.97		 1 (0.001)
1 (0.002)		 39 (0.057)
37 (0.058)		 645 (0.942)
601 (0.941)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   C-Allele T-Allele C/C
(frequency)		 C/T
(frequency)		 T/T
(frequency)
 Caucasian
rs17533945 Denmark MS
CTR		 0.40
0.39		 0.60
0.61		 78 (0.160)
71 (0.152)		 234 (0.480)
223 (0.476)		 176 (0.361)
174 (0.372)
rs17533945 Finland MS
CTR		 0.49
0.48		 0.51
0.52		 216 (0.240)
305 (0.230)		 449 (0.499)
662 (0.500)		 234 (0.260)
358 (0.270)
rs17533945 Norway MS
CTR		 0.41
0.39		 0.59
0.61		 58 (0.167)
56 (0.152)		 169 (0.486)
176 (0.477)		 121 (0.348)
137 (0.371)
rs17533945 Sweden MS
CTR		 0.41
0.41		 0.59
0.59		 115 (0.168)
107 (0.167)		 332 (0.485)
310 (0.485)		 238 (0.347)
222 (0.347)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   T-Allele C-Allele T/T
(frequency)		 T/C
(frequency)		 C/C
(frequency)
 Caucasian
rs2279006 Denmark MS
CTR		 0.09
0.09		 0.91
0.91		 4 (0.008)
4 (0.009)		 80 (0.164)
77 (0.164)		 404 (0.828)
388 (0.827)
rs2279006 Finland MS
CTR		 0.07
0.07		 0.93
0.93		 4 (0.004)
6 (0.005)		 117 (0.130)
173 (0.131)		 778 (0.865)
1146 (0.865)
rs2279006 Norway MS
CTR		 0.06
0.05		 0.94
0.95		 1 (0.003)
1 (0.003)		 40 (0.115)
35 (0.095)		 307 (0.882)
333 (0.902)
rs2279006 Sweden MS
CTR		 0.06
0.08		 0.94
0.92		 2 (0.003)
4 (0.006)		 78 (0.114)
94 (0.147)		 605 (0.883)
541 (0.847)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   T-Allele C-Allele T/T
(frequency)		 T/C
(frequency)		 C/C
(frequency)
 Caucasian
rs3745349 Denmark MS
CTR		 0.21
0.22		 0.79
0.78		 22 (0.045)
23 (0.049)		 161 (0.330)
160 (0.342)		 305 (0.625)
285 (0.609)
rs3745349 Finland MS
CTR		 0.17
0.16		 0.83
0.84		 26 (0.029)
34 (0.026)		 254 (0.283)
356 (0.269)		 619 (0.689)
935 (0.706)
rs3745349 Norway MS
CTR		 0.19
0.21		 0.81
0.79		 13 (0.037)
16 (0.043)		 107 (0.307)
123 (0.333)		 228 (0.655)
230 (0.623)
rs3745349 Sweden MS
CTR		 0.19
0.19		 0.81
0.81		 25 (0.036)
23 (0.036)		 211 (0.308)
197 (0.308)		 449 (0.655)
419 (0.656)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   T-Allele G-Allele T/T
(frequency)		 T/G
(frequency)		 G/G
(frequency)
 Caucasian
rs3826689 Denmark MS
CTR		 0.41
0.38		 0.59
0.62		 82 (0.168)
68 (0.145)		 236 (0.484)
220 (0.470)		 170 (0.348)
180 (0.385)
rs3826689 Finland MS
CTR		 0.41
0.43		 0.59
0.57		 151 (0.168)
245 (0.185)		 435 (0.484)
650 (0.491)		 313 (0.348)
430 (0.325)
rs3826689 Norway MS
CTR		 0.37
0.37		 0.63
0.63		 48 (0.138)
51 (0.138)		 162 (0.466)
172 (0.466)		 138 (0.397)
146 (0.396)
rs3826689 Sweden MS
CTR		 0.40
0.39		 0.60
0.61		 110 (0.161)
97 (0.152)		 328 (0.479)
304 (0.476)		 247 (0.361)
238 (0.372)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   A-Allele G-Allele A/A
(frequency)		 A/G
(frequency)		 G/G
(frequency)
 Caucasian
rs7246865 Denmark MS
CTR		 0.24
0.25		 0.76
0.75		 28 (0.057)
29 (0.062)		 178 (0.365)
175 (0.375)		 282 (0.578)
263 (0.563)
rs7246865 Finland MS
CTR		 0.20
0.20		 0.80
0.80		 36 (0.040)
53 (0.040)		 288 (0.320)
424 (0.320)		 575 (0.640)
848 (0.640)
rs7246865 Norway MS
CTR		 0.24
0.22		 0.76
0.78		 20 (0.057)
18 (0.049)		 127 (0.365)
127 (0.344)		 201 (0.578)
224 (0.607)
rs7246865 Sweden MS
CTR		 0.24
0.23		 0.76
0.77		 39 (0.057)
34 (0.053)		 250 (0.365)
226 (0.354)		 396 (0.578)
379 (0.593)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Family-Based Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)		 Population   C-Allele T-Allele C/C
(frequency)		 C/T
(frequency)		 T/T
(frequency)
 Caucasian
rs10423232 Overlaps with Kemppinen, 2009 (CC) MS
CTR		 -
-		 -
-		 0 (-)
0 (-)		 0 (-)
0 (-)		 0 (-)
0 (-)
(-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details).

Family-Based Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)		 Population   G-Allele C-Allele G/G
(frequency)		 G/C
(frequency)		 C/C
(frequency)
 Caucasian
rs11673417 Overlaps with Kemppinen, 2009 (CC) MS
CTR		 -
-		 -
-		 0 (-)
0 (-)		 0 (-)
0 (-)		 0 (-)
0 (-)
(-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details).

Family-Based Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)		 Population   A-Allele C-Allele A/A
(frequency)		 A/C
(frequency)		 C/C
(frequency)
 Caucasian
rs12986130 Overlaps with Kemppinen, 2009 (CC) MS
CTR		 -
-		 -
-		 0 (-)
0 (-)		 0 (-)
0 (-)		 0 (-)
0 (-)
(-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details).

Family-Based Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)		 Population   A-Allele C-Allele A/A
(frequency)		 A/C
(frequency)		 C/C
(frequency)
 Caucasian
rs1457092 Overlaps with Kemppinen, 2009 (CC) MS
CTR		 -
-		 -
-		 0 (-)
0 (-)		 0 (-)
0 (-)		 0 (-)
0 (-)
(-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details).

Family-Based Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)		 Population   T-Allele C-Allele T/T
(frequency)		 T/C
(frequency)		 C/C
(frequency)
 Caucasian
rs17533868 Overlaps with Kemppinen, 2009 (CC) MS
CTR		 -
-		 -
-		 0 (-)
0 (-)		 0 (-)
0 (-)		 0 (-)
0 (-)
(-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details).

Family-Based Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)		 Population   C-Allele T-Allele C/C
(frequency)		 C/T
(frequency)		 T/T
(frequency)
 Caucasian
rs17533945 Overlaps with Kemppinen, 2009 (CC) MS
CTR		 -
-		 -
-		 0 (-)
0 (-)		 0 (-)
0 (-)		 0 (-)
0 (-)
(-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details).

Family-Based Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)		 Population   T-Allele C-Allele T/T
(frequency)		 T/C
(frequency)		 C/C
(frequency)
 Caucasian
rs2279006 Overlaps with Kemppinen, 2009 (CC) MS
CTR		 -
-		 -
-		 0 (-)
0 (-)		 0 (-)
0 (-)		 0 (-)
0 (-)
(-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details).

Family-Based Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)		 Population   T-Allele C-Allele T/T
(frequency)		 T/C
(frequency)		 C/C
(frequency)
 Caucasian
rs3745349 Overlaps with Kemppinen, 2009 (CC) MS
CTR		 -
-		 -
-		 0 (-)
0 (-)		 0 (-)
0 (-)		 0 (-)
0 (-)
(-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details).

Family-Based Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)		 Population   T-Allele G-Allele T/T
(frequency)		 T/G
(frequency)		 G/G
(frequency)
 Caucasian
rs3826689 Overlaps with Kemppinen, 2009 (CC) MS
CTR		 -
-		 -
-		 0 (-)
0 (-)		 0 (-)
0 (-)		 0 (-)
0 (-)
(-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details).

Family-Based Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)		 Population   A-Allele G-Allele A/A
(frequency)		 A/G
(frequency)		 G/G
(frequency)
 Caucasian
rs7246865 Overlaps with Kemppinen, 2009 (CC) MS
CTR		 -
-		 -
-		 0 (-)
0 (-)		 0 (-)
0 (-)		 0 (-)
0 (-)
(-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details).

Family-Based Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)		 Population   G-Allele T-Allele G/G
(frequency)		 G/T
(frequency)		 T/T
(frequency)
 Caucasian
rs1545620 Overlaps with Kemppinen, 2009 (CC) MS
CTR		 -
-		 -
-		 0 (-)
0 (-)		 0 (-)
0 (-)		 0 (-)
0 (-)
(-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details).

Family-Based Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)		 Population   A-Allele C-Allele A/A
(frequency)		 A/C
(frequency)		 C/C
(frequency)
 Caucasian
rs8099879 Overlaps with Kemppinen, 2009 (CC) MS
CTR		 -
-		 -
-		 0 (-)
0 (-)		 0 (-)
0 (-)		 0 (-)
0 (-)
(-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details).

Family-Based Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)		 Population   T-Allele C-Allele T/T
(frequency)		 T/C
(frequency)		 C/C
(frequency)
 Caucasian
rs8107108 Overlaps with Kemppinen, 2009 (CC) MS
CTR		 -
-		 -
-		 0 (-)
0 (-)		 0 (-)
0 (-)		 0 (-)
0 (-)
(-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details).

Family-Based Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)		 Population   T-Allele C-Allele T/T
(frequency)		 T/C
(frequency)		 C/C
(frequency)
 Caucasian
rs962917 Overlaps with Kemppinen, 2009 (CC) MS
CTR		 -
-		 -
-		 0 (-)
0 (-)		 0 (-)
0 (-)		 0 (-)
0 (-)
(-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details).

Family-Based Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)		 Population   T-Allele C-Allele T/T
(frequency)		 T/C
(frequency)		 C/C
(frequency)
 Caucasian
rs2279003 Overlaps with Kemppinen, 2009 (CC) MS
CTR		 -
-		 -
-		 0 (-)
0 (-)		 0 (-)
0 (-)		 0 (-)
0 (-)
(-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details).

Family-Based Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)		 Population   A-Allele G-Allele A/A
(frequency)		 A/G
(frequency)		 G/G
(frequency)
 Caucasian
rs2305764 Overlaps with Kemppinen, 2009 (CC) MS
CTR		 -
-		 -
-		 0 (-)
0 (-)		 0 (-)
0 (-)		 0 (-)
0 (-)
(-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details).

Family-Based Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)		 Population   T-Allele C-Allele T/T
(frequency)		 T/C
(frequency)		 C/C
(frequency)
 Caucasian
rs2305765 Overlaps with Kemppinen, 2009 (CC) MS
CTR		 -
-		 -
-		 0 (-)
0 (-)		 0 (-)
0 (-)		 0 (-)
0 (-)
(-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details).

Family-Based Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)		 Population   G-Allele A-Allele G/G
(frequency)		 G/A
(frequency)		 A/A
(frequency)
 Caucasian
rs7254359 Overlaps with Kemppinen, 2009 (CC) MS
CTR		 -
-		 -
-		 0 (-)
0 (-)		 0 (-)
0 (-)		 0 (-)
0 (-)
(-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details).
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MSGene Recent Updates
MSGene Top Results
Top Results Details
1. HLA-DRB1
2. IL2RA
3. IL7R
4. TAGAP
5. CLEC16A
6. EVI5
7. GWA_16q24.1
8. GWA_5p13.1
9. TTC34
10. AHI1   
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Polymorphisms: 2907
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