MSGene - Polymorphism Details
	Study: GAMES, 2006  Gene: JAG1 (AGS; AHD; AWS; CD339; HJ1; JAGL1; MGC104644)   View on SZGene  Protein: jagged 1 (Alagille syndrome)(jagged 1)  Chromosome: 20   (View: 1  2  3  4  5  6  7  8  9  10  11  12  13  14  15  16  17  18  19  20  21  22  X  Y  MT)  Status: Updated 25 November 2011 Total number of polymorphisms investigated by this study: 95 Case-Control Studies (by ethnic group)   Genotypes Polymorphism ID# (Link to NCBI) Population   n.a.-Allele n.a.-Allele n.a./n.a. (frequency) n.a./n.a. (frequency) n.a./n.a. (frequency)  Caucasian D20S894 Multiple MS CTR - - - - 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) (-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details). Family-Based Studies (by ethnic group)   Genotypes Polymorphism ID# (Link to NCBI) Population   n.a.-Allele n.a.-Allele n.a./n.a. (frequency) n.a./n.a. (frequency) n.a./n.a. (frequency)  Caucasian D20S894 Multiple MS CTR - - - - 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) (-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details). Family-Based Studies (by ethnic group)   Genotypes Polymorphism ID# (Link to NCBI) Population   m-Allele M-Allele m/m (frequency) m/M (frequency) M/M (frequency)  Caucasian C_11674022_10 UK MS CTR - - - - 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) (-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details). Family-Based Studies (by ethnic group)   Genotypes Polymorphism ID# (Link to NCBI) Population   G-Allele T-Allele G/G (frequency) G/T (frequency) T/T (frequency)  Caucasian C_11674070_10 UK MS CTR - - - - 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) (-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details). Family-Based Studies (by ethnic group)   Genotypes Polymorphism ID# (Link to NCBI) Population   A-Allele G-Allele A/A (frequency) A/G (frequency) G/G (frequency)  Caucasian C_2393408_10 UK MS CTR - - - - 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) (-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details). Family-Based Studies (by ethnic group)   Genotypes Polymorphism ID# (Link to NCBI) Population   A-Allele C-Allele A/A (frequency) A/C (frequency) C/C (frequency)  Caucasian C_597193_10 UK MS CTR - - - - 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) (-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details). Family-Based Studies (by ethnic group)   Genotypes Polymorphism ID# (Link to NCBI) Population   GT-Allele --Allele GT/GT (frequency) GT/- (frequency) -/- (frequency)  Caucasian JAG1_mex19 (STR) UK MS CTR - - - - 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) (-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details). Family-Based Studies (by ethnic group)   Genotypes Polymorphism ID# (Link to NCBI) Population   A-Allele G-Allele A/A (frequency) A/G (frequency) G/G (frequency)  Caucasian JAG1_mex5 (STR) UK MS CTR - - - - 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) (-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details). Family-Based Studies (by ethnic group)   Genotypes Polymorphism ID# (Link to NCBI) Population   C-Allele T-Allele C/C (frequency) C/T (frequency) T/T (frequency)  Caucasian JAG1_mutr (STR) UK MS CTR - - - - 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) (-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details). Family-Based Studies (by ethnic group)   Genotypes Polymorphism ID# (Link to NCBI) Population   C-Allele A-Allele C/C (frequency) C/A (frequency) A/A (frequency)  Caucasian rs10485742 UK MS CTR - - - - 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) (-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details). Family-Based Studies (by ethnic group)   Genotypes Polymorphism ID# (Link to NCBI) Population   C-Allele T-Allele C/C (frequency) C/T (frequency) T/T (frequency)  Caucasian rs10485743 UK MS CTR - - - - 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) (-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details). Family-Based Studies (by ethnic group)   Genotypes Polymorphism ID# (Link to NCBI) Population   C-Allele G-Allele C/C (frequency) C/G (frequency) G/G (frequency)  Caucasian rs1051419 UK MS CTR - - - - 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) (-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details). Family-Based Studies (by ethnic group)   Genotypes Polymorphism ID# (Link to NCBI) Population   T-Allele C-Allele T/T (frequency) T/C (frequency) C/C (frequency)  Caucasian rs1051421 UK MS CTR - - - - 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) (-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details). Family-Based Studies (by ethnic group)   Genotypes Polymorphism ID# (Link to NCBI) Population   C-Allele T-Allele C/C (frequency) C/T (frequency) T/T (frequency)  Caucasian rs1062227 UK MS CTR - - - - 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) (-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details). Family-Based Studies (by ethnic group)   Genotypes Polymorphism ID# (Link to NCBI) Population   C-Allele T-Allele C/C (frequency) C/T (frequency) T/T (frequency)  Caucasian rs11699674 UK MS CTR - - - - 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) (-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details). Family-Based Studies (by ethnic group)   Genotypes Polymorphism ID# (Link to NCBI) Population   G-Allele A-Allele G/G (frequency) G/A (frequency) A/A (frequency)  Caucasian rs11907050 UK MS CTR - - - - 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) (-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details). Family-Based Studies (by ethnic group)   Genotypes Polymorphism ID# (Link to NCBI) Population   A-Allele G-Allele A/A (frequency) A/G (frequency) G/G (frequency)  Caucasian rs1232603 UK MS CTR - - - - 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) (-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details). Family-Based Studies (by ethnic group)   Genotypes Polymorphism ID# (Link to NCBI) Population   m-Allele M-Allele m/m (frequency) m/M (frequency) M/M (frequency)  Caucasian rs1232604 UK MS CTR - - - - 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) (-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details). Family-Based Studies (by ethnic group)   Genotypes Polymorphism ID# (Link to NCBI) Population   C-Allele T-Allele C/C (frequency) C/T (frequency) T/T (frequency)  Caucasian rs1232605 UK MS CTR - - - - 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) (-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details). Family-Based Studies (by ethnic group)   Genotypes Polymorphism ID# (Link to NCBI) Population   C-Allele T-Allele C/C (frequency) C/T (frequency) T/T (frequency)  Caucasian rs1232606 UK MS CTR - - - - 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) (-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details). Family-Based Studies (by ethnic group)   Genotypes Polymorphism ID# (Link to NCBI) Population   A-Allele G-Allele A/A (frequency) A/G (frequency) G/G (frequency)  Caucasian rs1232607 UK MS CTR - - - - 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) (-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details). Family-Based Studies (by ethnic group)   Genotypes Polymorphism ID# (Link to NCBI) Population   A-Allele C-Allele A/A (frequency) A/C (frequency) C/C (frequency)  Caucasian rs12625256 UK MS CTR - - - - 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) (-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details). Family-Based Studies (by ethnic group)   Genotypes Polymorphism ID# (Link to NCBI) Population   A-Allele G-Allele A/A (frequency) A/G (frequency) G/G (frequency)  Caucasian rs17536052 UK MS CTR - - - - 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) (-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details). Family-Based Studies (by ethnic group)   Genotypes Polymorphism ID# (Link to NCBI) Population   C-Allele T-Allele C/C (frequency) C/T (frequency) T/T (frequency)  Caucasian rs1801138 UK MS CTR - - - - 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) (-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details). Family-Based Studies (by ethnic group)   Genotypes Polymorphism ID# (Link to NCBI) Population   A-Allele T-Allele A/A (frequency) A/T (frequency) T/T (frequency)  Caucasian rs1801140 UK MS CTR - - - - 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) (-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details). Family-Based Studies (by ethnic group)   Genotypes Polymorphism ID# (Link to NCBI) Population   m-Allele M-Allele m/m (frequency) m/M (frequency) M/M (frequency)  Caucasian rs1883801 UK MS CTR - - - - 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) (-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details). Family-Based Studies (by ethnic group)   Genotypes Polymorphism ID# (Link to NCBI) Population   G-Allele A-Allele G/G (frequency) G/A (frequency) A/A (frequency)  Caucasian rs1883802 UK MS CTR - - - - 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) (-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details). Family-Based Studies (by ethnic group)   Genotypes Polymorphism ID# (Link to NCBI) Population   T-Allele G-Allele T/T (frequency) T/G (frequency) G/G (frequency)  Caucasian rs1997814 UK MS CTR - - - - 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) (-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details). Family-Based Studies (by ethnic group)   Genotypes Polymorphism ID# (Link to NCBI) Population   G-Allele A-Allele G/G (frequency) G/A (frequency) A/A (frequency)  Caucasian rs2143618 UK MS CTR - - - - 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) (-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details). Family-Based Studies (by ethnic group)   Genotypes Polymorphism ID# (Link to NCBI) Population   A-Allele G-Allele A/A (frequency) A/G (frequency) G/G (frequency)  Caucasian rs2143619 UK MS CTR - - - - 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) (-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details). Family-Based Studies (by ethnic group)   Genotypes Polymorphism ID# (Link to NCBI) Population   A-Allele G-Allele A/A (frequency) A/G (frequency) G/G (frequency)  Caucasian rs2179687 UK MS CTR - - - - 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) (-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details). Family-Based Studies (by ethnic group)   Genotypes Polymorphism ID# (Link to NCBI) Population   T-Allele C-Allele T/T (frequency) T/C (frequency) C/C (frequency)  Caucasian rs2235810 UK MS CTR - - - - 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) (-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details). Family-Based Studies (by ethnic group)   Genotypes Polymorphism ID# (Link to NCBI) Population   C-Allele T-Allele C/C (frequency) C/T (frequency) T/T (frequency)  Caucasian rs2235811 UK MS CTR - - - - 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) (-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details). Family-Based Studies (by ethnic group)   Genotypes Polymorphism ID# (Link to NCBI) Population   A-Allele G-Allele A/A (frequency) A/G (frequency) G/G (frequency)  Caucasian rs2273060 UK MS CTR - - - - 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) (-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details). Family-Based Studies (by ethnic group)   Genotypes Polymorphism ID# (Link to NCBI) Population   G-Allele T-Allele G/G (frequency) G/T (frequency) T/T (frequency)  Caucasian rs2273061 UK MS CTR - - - - 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) (-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details). Family-Based Studies (by ethnic group)   Genotypes Polymorphism ID# (Link to NCBI) Population   G-Allele C-Allele G/G (frequency) G/C (frequency) C/C (frequency)  Caucasian rs2423507 UK MS CTR - - - - 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) (-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details). Family-Based Studies (by ethnic group)   Genotypes Polymorphism ID# (Link to NCBI) Population   A-Allele T-Allele A/A (frequency) A/T (frequency) T/T (frequency)  Caucasian rs2423510 UK MS CTR - - - - 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) (-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details). Family-Based Studies (by ethnic group)   Genotypes Polymorphism ID# (Link to NCBI) Population   A-Allele G-Allele A/A (frequency) A/G (frequency) G/G (frequency)  Caucasian rs3178014 UK MS CTR - - - - 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) (-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details). Family-Based Studies (by ethnic group)   Genotypes Polymorphism ID# (Link to NCBI) Population   A-Allele G-Allele A/A (frequency) A/G (frequency) G/G (frequency)  Caucasian rs34107161  UK MS CTR - - - - 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) (-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details). Family-Based Studies (by ethnic group)   Genotypes Polymorphism ID# (Link to NCBI) Population   C-Allele T-Allele C/C (frequency) C/T (frequency) T/T (frequency)  Caucasian rs34325313  UK MS CTR - - - - 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) (-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details). Family-Based Studies (by ethnic group)   Genotypes Polymorphism ID# (Link to NCBI) Population   A-Allele C-Allele A/A (frequency) A/C (frequency) C/C (frequency)  Caucasian rs35357944   UK MS CTR - - - - 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) (-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details). Family-Based Studies (by ethnic group)   Genotypes Polymorphism ID# (Link to NCBI) Population   A-Allele C-Allele A/A (frequency) A/C (frequency) C/C (frequency)  Caucasian rs35761929  UK MS CTR - - - - 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) (-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details). Family-Based Studies (by ethnic group)   Genotypes Polymorphism ID# (Link to NCBI) Population   C-Allele T-Allele C/C (frequency) C/T (frequency) T/T (frequency)  Caucasian rs35793014  UK MS CTR - - - - 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) (-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details). Family-Based Studies (by ethnic group)   Genotypes Polymorphism ID# (Link to NCBI) Population   C-Allele G-Allele C/C (frequency) C/G (frequency) G/G (frequency)  Caucasian rs35891274 UK MS CTR - - - - 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) (-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details). Family-Based Studies (by ethnic group)   Genotypes Polymorphism ID# (Link to NCBI) Population   A-Allele G-Allele A/A (frequency) A/G (frequency) G/G (frequency)  Caucasian rs36206709 UK MS CTR - - - - 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) (-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details). Family-Based Studies (by ethnic group)   Genotypes Polymorphism ID# (Link to NCBI) Population   C-Allele T-Allele C/C (frequency) C/T (frequency) T/T (frequency)  Caucasian rs3748477 UK MS CTR - - - - 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) (-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details). Family-Based Studies (by ethnic group)   Genotypes Polymorphism ID# (Link to NCBI) Population   A-Allele T-Allele A/A (frequency) A/T (frequency) T/T (frequency)  Caucasian rs3748478 UK MS CTR - - - - 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) (-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details). Family-Based Studies (by ethnic group)   Genotypes Polymorphism ID# (Link to NCBI) Population   A-Allele G-Allele A/A (frequency) A/G (frequency) G/G (frequency)  Caucasian rs3748479 UK MS CTR - - - - 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) (-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details). Family-Based Studies (by ethnic group)   Genotypes Polymorphism ID# (Link to NCBI) Population   G-Allele T-Allele G/G (frequency) G/T (frequency) T/T (frequency)  Caucasian rs3748480 UK MS CTR - - - - 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) (-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details). Family-Based Studies (by ethnic group)   Genotypes Polymorphism ID# (Link to NCBI) Population   A-Allele G-Allele A/A (frequency) A/G (frequency) G/G (frequency)  Caucasian rs3790157 UK MS CTR - - - - 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) (-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details). Family-Based Studies (by ethnic group)   Genotypes Polymorphism ID# (Link to NCBI) Population   C-Allele T-Allele C/C (frequency) C/T (frequency) T/T (frequency)  Caucasian rs3790158 UK MS CTR - - - - 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) (-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details). Family-Based Studies (by ethnic group)   Genotypes Polymorphism ID# (Link to NCBI) Population   A-Allele G-Allele A/A (frequency) A/G (frequency) G/G (frequency)  Caucasian rs3790159 UK MS CTR - - - - 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) (-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details). Family-Based Studies (by ethnic group)   Genotypes Polymorphism ID# (Link to NCBI) Population   C-Allele T-Allele C/C (frequency) C/T (frequency) T/T (frequency)  Caucasian rs3790161 UK MS CTR - - - - 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) (-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details). Family-Based Studies (by ethnic group)   Genotypes Polymorphism ID# (Link to NCBI) Population   A-Allele C-Allele A/A (frequency) A/C (frequency) C/C (frequency)  Caucasian rs3817996 UK MS CTR - - - - 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) (-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details). Family-Based Studies (by ethnic group)   Genotypes Polymorphism ID# (Link to NCBI) Population   C-Allele T-Allele C/C (frequency) C/T (frequency) T/T (frequency)  Caucasian rs6032915 UK MS CTR - - - - 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) (-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details). Family-Based Studies (by ethnic group)   Genotypes Polymorphism ID# (Link to NCBI) Population   A-Allele G-Allele A/A (frequency) A/G (frequency) G/G (frequency)  Caucasian rs6040050 UK MS CTR - - - - 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) (-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details). Family-Based Studies (by ethnic group)   Genotypes Polymorphism ID# (Link to NCBI) Population   C-Allele T-Allele C/C (frequency) C/T (frequency) T/T (frequency)  Caucasian rs6040055 UK MS CTR - - - - 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) (-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details). Family-Based Studies (by ethnic group)   Genotypes Polymorphism ID# (Link to NCBI) Population   C-Allele T-Allele C/C (frequency) C/T (frequency) T/T (frequency)  Caucasian rs6040056 UK MS CTR - - - - 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) (-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details). Family-Based Studies (by ethnic group)   Genotypes Polymorphism ID# (Link to NCBI) Population   C-Allele T-Allele C/C (frequency) C/T (frequency) T/T (frequency)  Caucasian rs6040058 UK MS CTR - - - - 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) (-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details). Family-Based Studies (by ethnic group)   Genotypes Polymorphism ID# (Link to NCBI) Population   C-Allele T-Allele C/C (frequency) C/T (frequency) T/T (frequency)  Caucasian rs6040060 UK MS CTR - - - - 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) (-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details). Family-Based Studies (by ethnic group)   Genotypes Polymorphism ID# (Link to NCBI) Population   C-Allele T-Allele C/C (frequency) C/T (frequency) T/T (frequency)  Caucasian rs6040061 UK MS CTR - - - - 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) (-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details). Family-Based Studies (by ethnic group)   Genotypes Polymorphism ID# (Link to NCBI) Population   G-Allele T-Allele G/G (frequency) G/T (frequency) T/T (frequency)  Caucasian rs6040062 UK MS CTR - - - - 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) (-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details). Family-Based Studies (by ethnic group)   Genotypes Polymorphism ID# (Link to NCBI) Population   A-Allele C-Allele A/A (frequency) A/C (frequency) C/C (frequency)  Caucasian rs6040063 UK MS CTR - - - - 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) (-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details). Family-Based Studies (by ethnic group)   Genotypes Polymorphism ID# (Link to NCBI) Population   T-Allele C-Allele T/T (frequency) T/C (frequency) C/C (frequency)  Caucasian rs6040065 UK MS CTR - - - - 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) (-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details). Family-Based Studies (by ethnic group)   Genotypes Polymorphism ID# (Link to NCBI) Population   T-Allele C-Allele T/T (frequency) T/C (frequency) C/C (frequency)  Caucasian rs6040068 UK MS CTR - - - - 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) (-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details). Family-Based Studies (by ethnic group)   Genotypes Polymorphism ID# (Link to NCBI) Population   A-Allele G-Allele A/A (frequency) A/G (frequency) G/G (frequency)  Caucasian rs6040069 UK MS CTR - - - - 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) (-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details). Family-Based Studies (by ethnic group)   Genotypes Polymorphism ID# (Link to NCBI) Population   A-Allele C-Allele A/A (frequency) A/C (frequency) C/C (frequency)  Caucasian rs6040073 UK MS CTR - - - - 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) (-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details). Family-Based Studies (by ethnic group)   Genotypes Polymorphism ID# (Link to NCBI) Population   T-Allele G-Allele T/T (frequency) T/G (frequency) G/G (frequency)  Caucasian rs6040079 UK MS CTR - - - - 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) (-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details). Family-Based Studies (by ethnic group)   Genotypes Polymorphism ID# (Link to NCBI) Population   m-Allele M-Allele m/m (frequency) m/M (frequency) M/M (frequency)  Caucasian rs6074162 UK MS CTR - - - - 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) (-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details). Family-Based Studies (by ethnic group)   Genotypes Polymorphism ID# (Link to NCBI) Population   C-Allele T-Allele C/C (frequency) C/T (frequency) T/T (frequency)  Caucasian rs6074164 UK MS CTR - - - - 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) (-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details). Family-Based Studies (by ethnic group)   Genotypes Polymorphism ID# (Link to NCBI) Population   A-Allele G-Allele A/A (frequency) A/G (frequency) G/G (frequency)  Caucasian rs6074170 UK MS CTR - - - - 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) (-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details). Family-Based Studies (by ethnic group)   Genotypes Polymorphism ID# (Link to NCBI) Population   A-Allele G-Allele A/A (frequency) A/G (frequency) G/G (frequency)  Caucasian rs6077858 UK MS CTR - - - - 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) (-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details). Family-Based Studies (by ethnic group)   Genotypes Polymorphism ID# (Link to NCBI) Population   A-Allele T-Allele A/A (frequency) A/T (frequency) T/T (frequency)  Caucasian rs6077861 UK MS CTR - - - - 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) (-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details). Family-Based Studies (by ethnic group)   Genotypes Polymorphism ID# (Link to NCBI) Population   C-Allele T-Allele C/C (frequency) C/T (frequency) T/T (frequency)  Caucasian rs6077864 UK MS CTR - - - - 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) (-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details). Family-Based Studies (by ethnic group)   Genotypes Polymorphism ID# (Link to NCBI) Population   T-Allele C-Allele T/T (frequency) T/C (frequency) C/C (frequency)  Caucasian rs6077868 UK MS CTR - - - - 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) (-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details). Family-Based Studies (by ethnic group)   Genotypes Polymorphism ID# (Link to NCBI) Population   G-Allele A-Allele G/G (frequency) G/A (frequency) A/A (frequency)  Caucasian rs6077869 UK MS CTR - - - - 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) (-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details). Family-Based Studies (by ethnic group)   Genotypes Polymorphism ID# (Link to NCBI) Population   m-Allele M-Allele m/m (frequency) m/M (frequency) M/M (frequency)  Caucasian rs6077870 UK MS CTR - - - - 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) (-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details). Family-Based Studies (by ethnic group)   Genotypes Polymorphism ID# (Link to NCBI) Population   T-Allele C-Allele T/T (frequency) T/C (frequency) C/C (frequency)  Caucasian rs6104644 UK MS CTR - - - - 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) (-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details). Family-Based Studies (by ethnic group)   Genotypes Polymorphism ID# (Link to NCBI) Population   A-Allele G-Allele A/A (frequency) A/G (frequency) G/G (frequency)  Caucasian rs6108653 UK MS CTR - - - - 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) (-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details). Family-Based Studies (by ethnic group)   Genotypes Polymorphism ID# (Link to NCBI) Population   A-Allele G-Allele A/A (frequency) A/G (frequency) G/G (frequency)  Caucasian rs6108658 UK MS CTR - - - - 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) (-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details). Family-Based Studies (by ethnic group)   Genotypes Polymorphism ID# (Link to NCBI) Population   A-Allele G-Allele A/A (frequency) A/G (frequency) G/G (frequency)  Caucasian rs6133986 UK MS CTR - - - - 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) (-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details). Family-Based Studies (by ethnic group)   Genotypes Polymorphism ID# (Link to NCBI) Population   T-Allele C-Allele T/T (frequency) T/C (frequency) C/C (frequency)  Caucasian rs6133987 UK MS CTR - - - - 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) (-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details). Family-Based Studies (by ethnic group)   Genotypes Polymorphism ID# (Link to NCBI) Population   A-Allele G-Allele A/A (frequency) A/G (frequency) G/G (frequency)  Caucasian rs6514116 UK MS CTR - - - - 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) (-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details). Family-Based Studies (by ethnic group)   Genotypes Polymorphism ID# (Link to NCBI) Population   C-Allele T-Allele C/C (frequency) C/T (frequency) T/T (frequency)  Caucasian rs7263254 UK MS CTR - - - - 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) (-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details). Family-Based Studies (by ethnic group)   Genotypes Polymorphism ID# (Link to NCBI) Population   G-Allele A-Allele G/G (frequency) G/A (frequency) A/A (frequency)  Caucasian rs7265068 UK MS CTR - - - - 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) (-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details). Family-Based Studies (by ethnic group)   Genotypes Polymorphism ID# (Link to NCBI) Population   C-Allele A-Allele C/C (frequency) C/A (frequency) A/A (frequency)  Caucasian rs7267595 UK MS CTR - - - - 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) (-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details). Family-Based Studies (by ethnic group)   Genotypes Polymorphism ID# (Link to NCBI) Population   G-Allele T-Allele G/G (frequency) G/T (frequency) T/T (frequency)  Caucasian rs7269017 UK MS CTR - - - - 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) (-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details). Family-Based Studies (by ethnic group)   Genotypes Polymorphism ID# (Link to NCBI) Population   A-Allele G-Allele A/A (frequency) A/G (frequency) G/G (frequency)  Caucasian rs7271215 UK MS CTR - - - - 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) (-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details). Family-Based Studies (by ethnic group)   Genotypes Polymorphism ID# (Link to NCBI) Population   A-Allele G-Allele A/A (frequency) A/G (frequency) G/G (frequency)  Caucasian rs7828 UK MS CTR - - - - 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) (-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details). Family-Based Studies (by ethnic group)   Genotypes Polymorphism ID# (Link to NCBI) Population   T-Allele C-Allele T/T (frequency) T/C (frequency) C/C (frequency)  Caucasian rs8119569 UK MS CTR - - - - 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) (-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details). Family-Based Studies (by ethnic group)   Genotypes Polymorphism ID# (Link to NCBI) Population   A-Allele G-Allele A/A (frequency) A/G (frequency) G/G (frequency)  Caucasian rs8708 UK MS CTR - - - - 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) (-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details). Family-Based Studies (by ethnic group)   Genotypes Polymorphism ID# (Link to NCBI) Population   C-Allele G-Allele C/C (frequency) C/G (frequency) G/G (frequency)  Caucasian rs889509 UK MS CTR - - - - 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) (-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details). Family-Based Studies (by ethnic group)   Genotypes Polymorphism ID# (Link to NCBI) Population   T-Allele G-Allele T/T (frequency) T/G (frequency) G/G (frequency)  Caucasian rs910118 UK MS CTR - - - - 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) (-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details). Family-Based Studies (by ethnic group)   Genotypes Polymorphism ID# (Link to NCBI) Population   A-Allele T-Allele A/A (frequency) A/T (frequency) T/T (frequency)  Caucasian rs910119 UK MS CTR - - - - 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) (-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details). Family-Based Studies (by ethnic group)   Genotypes Polymorphism ID# (Link to NCBI) Population   A-Allele G-Allele A/A (frequency) A/G (frequency) G/G (frequency)  Caucasian JAG1_rsInt33 UK MS CTR - - - - 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) (-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details). Family-Based Studies (by ethnic group)   Genotypes Polymorphism ID# (Link to NCBI) Population   A-Allele G-Allele A/A (frequency) A/G (frequency) G/G (frequency)  Caucasian rs34742789 (ss48400480) UK MS CTR - - - - 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) 0 (-) (-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details).		Print this page Email this page MSDF RSS Text size Share & Bookmark Del.icio.us Digg Facebook Google Newsvine MSGene Recent Updates STAT3 MSGene Top Results Top Results Details 1.  HLA-DRB1 2.  IL2RA 3.  IL7R 4.  TAGAP 5.  CLEC16A 6.  EVI5 7.  GWA_16q24.1 8.  GWA_5p13.1 9.  TTC34 10.  AHI1    [see more] [close] 11.  GWA_3q24 12.  CD226 13.  CD5 14.  IL12B 15.  PLEK 16.  IL22RA2 17.  NCOA5 18.  STAT3 19.  GWA_2p21 20.  DKKL1 21.  CYP24A1 22.  TNFRSF1A 23.  TNFSF14 24.  CD86 25.  CD58 26.  GWA_3q12.3 27.  SH2B3 28.  SP140 29.  GPR65 30.  CYP27B1 31.  CD40 32.  MAPK1 33.  ZFP36L1 34.  AGAP2 35.  RPS6KB1 36.  SOX8 37.  MPV17L2 38.  PTPRK 39.  ZMIZ1 40.  PVR 41.  HHEX 42.  C1orf106 43.  PKIA 44.  BACH2 45.  MMEL1 46.  SLC30A7 47.  BATF 48.  KIF21B 49.  SAE1 50.  DLEU1 51.  MYC 52.  SYK 53.  RGS14 54.  DDAH1 55.  MERTK 56.  ZNF767 57.  CLECL1 58.  MANBA 59.  TYK2 60.  ZBTB46 61.  CDC37 62.  NDFIP1 63.  MAP3K14 64.  RGS1 65.  TMEM39A 66.  MALT1 67.  CARD11 68.  MAF 69.  IRF5 MSGene Stats Studies: 789 Genes: 809 Polymorphisms: 2907 Meta-analyses: 324 ALSGene AlzGene MSGene PDGene SZGene An up-to-date collection of all published genetic association studies.