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MSGene - Polymorphism Details
Study:
Nohra, 2010
Gene:
IL4R
(CD124; IL4RA)
View on SZGene
Protein:
interleukin 4 receptor
(OTTHUMP00000122506; interleukin 4 receptor alpha chain; interleukin-4 receptor alpha chain)
Chromosome:
16
(View:
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
X
Y
MT
)
Status:
Updated 25 November 2011
Total number of polymorphisms investigated by this study: 23
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
C-Allele
T-Allele
C/C
(frequency)
C/T
(frequency)
T/T
(frequency)
Caucasian
rs1801275 (Q551R)
Sweden (I)
MS
CTR
0.21
0.22
0.79
0.78
35 (0.037)
52 (0.046)
323 (0.343)
409 (0.358)
584 (0.620)
681 (0.596)
rs1801275 (Q551R)
Norway
MS
CTR
0.21
0.21
0.79
0.79
29 (0.062)
34 (0.076)
135 (0.288)
118 (0.264)
305 (0.650)
295 (0.660)
rs1801275 (Q551R)
Sweden (II)
MS
CTR
0.23
0.22
0.77
0.78
60 (0.055)
44 (0.045)
376 (0.347)
352 (0.358)
648 (0.598)
587 (0.597)
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
G-Allele
T-Allele
G/G
(frequency)
G/T
(frequency)
T/T
(frequency)
Caucasian
rs1805011 (E375A)
Sweden (II)
MS
CTR
0.12
0.12
0.88
0.88
15 (0.014)
12 (0.012)
223 (0.205)
208 (0.210)
850 (0.781)
769 (0.778)
rs1805011 (E375A)
Norway
MS
CTR
0.11
0.10
0.89
0.90
5 (0.009)
2 (0.004)
108 (0.200)
95 (0.183)
426 (0.790)
422 (0.813)
rs1805011 (E375A)
Sweden (I)
MS
CTR
0.10
0.11
0.90
0.89
23 (0.027)
18 (0.016)
127 (0.150)
221 (0.193)
697 (0.823)
904 (0.791)
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
G-Allele
A-Allele
G/G
(frequency)
G/A
(frequency)
A/A
(frequency)
Caucasian
rs1805015 (S478P)
Sweden (I)
MS
CTR
0.18
0.18
0.82
0.82
23 (0.030)
29 (0.027)
223 (0.291)
326 (0.307)
520 (0.679)
708 (0.666)
rs1805015 (S478P)
Norway
MS
CTR
0.15
0.15
0.85
0.85
12 (0.024)
23 (0.049)
129 (0.255)
93 (0.198)
365 (0.721)
354 (0.753)
rs1805015 (S478P)
Sweden (II)
MS
CTR
0.18
0.16
0.82
0.84
38 (0.035)
23 (0.024)
307 (0.284)
275 (0.283)
736 (0.681)
675 (0.694)
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
T-Allele
C-Allele
T/T
(frequency)
T/C
(frequency)
C/C
(frequency)
Caucasian
rs12102586
Sweden (I)
MS
CTR
0.09
0.11
0.91
0.89
5 (0.005)
13 (0.011)
165 (0.167)
230 (0.194)
817 (0.828)
941 (0.795)
rs12102586
Sweden (II)
MS
CTR
0.10
0.10
0.90
0.90
15 (0.014)
4 (0.004)
197 (0.181)
193 (0.195)
879 (0.806)
792 (0.801)
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
C-Allele
T-Allele
C/C
(frequency)
C/T
(frequency)
T/T
(frequency)
Caucasian
rs2234897
Sweden (II)
MS
CTR
0.03
0.04
0.97
0.96
0 (0.000)
1 (0.001)
75 (0.069)
70 (0.072)
1015 (0.931)
904 (0.927)
rs2234897
Sweden (I)
MS
CTR
0.03
0.04
0.97
0.96
0 (0.000)
4 (0.003)
58 (0.060)
90 (0.076)
904 (0.940)
1090 (0.921)
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
C-Allele
T-Allele
C/C
(frequency)
C/T
(frequency)
T/T
(frequency)
Caucasian
rs2234900
Sweden (I)
MS
CTR
0.12
0.11
0.88
0.89
19 (0.020)
13 (0.011)
194 (0.200)
230 (0.202)
758 (0.781)
896 (0.787)
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
A-Allele
G-Allele
A/A
(frequency)
A/G
(frequency)
G/G
(frequency)
Caucasian
rs1029489
Sweden (I)
MS
CTR
0.40
0.40
0.60
0.60
168 (0.170)
182 (0.156)
462 (0.469)
558 (0.480)
356 (0.361)
423 (0.364)
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
A-Allele
G-Allele
A/A
(frequency)
A/G
(frequency)
G/G
(frequency)
Caucasian
rs1110470
Sweden (I)
MS
CTR
0.50
0.49
0.50
0.51
250 (0.275)
275 (0.260)
413 (0.454)
490 (0.464)
247 (0.271)
291 (0.276)
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
T-Allele
C-Allele
T/T
(frequency)
T/C
(frequency)
C/C
(frequency)
Caucasian
rs16976728
Sweden (I)
MS
CTR
0.38
0.37
0.62
0.63
138 (0.154)
145 (0.144)
407 (0.454)
449 (0.446)
352 (0.392)
412 (0.410)
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
A-Allele
G-Allele
A/A
(frequency)
A/G
(frequency)
G/G
(frequency)
Caucasian
rs2239349
Sweden (I)
MS
CTR
0.07
0.08
0.93
0.92
2 (0.002)
9 (0.008)
134 (0.135)
180 (0.152)
853 (0.862)
999 (0.841)
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
A-Allele
C-Allele
A/A
(frequency)
A/C
(frequency)
C/C
(frequency)
Caucasian
rs2301807
Sweden (I)
MS
CTR
0.06
0.06
0.94
0.94
2 (0.002)
6 (0.005)
110 (0.117)
130 (0.115)
828 (0.881)
999 (0.880)
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
G-Allele
A-Allele
G/G
(frequency)
G/A
(frequency)
A/A
(frequency)
Caucasian
rs3024530
Sweden (I)
MS
CTR
0.44
0.43
0.56
0.57
193 (0.195)
225 (0.192)
482 (0.488)
553 (0.473)
313 (0.317)
391 (0.334)
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
G-Allele
T-Allele
G/G
(frequency)
G/T
(frequency)
T/T
(frequency)
Caucasian
rs3024560
Sweden (I)
MS
CTR
0.35
0.33
0.65
0.67
122 (0.126)
127 (0.109)
429 (0.443)
519 (0.447)
417 (0.431)
516 (0.444)
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
A-Allele
G-Allele
A/A
(frequency)
A/G
(frequency)
G/G
(frequency)
Caucasian
rs3024585
Sweden (I)
MS
CTR
0.43
0.44
0.57
0.56
187 (0.196)
223 (0.197)
453 (0.476)
549 (0.484)
312 (0.328)
362 (0.319)
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
T-Allele
C-Allele
T/T
(frequency)
T/C
(frequency)
C/C
(frequency)
Caucasian
rs3024613
Sweden (I)
MS
CTR
0.49
0.50
0.51
0.50
231 (0.250)
287 (0.256)
437 (0.473)
539 (0.480)
255 (0.276)
297 (0.264)
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
G-Allele
A-Allele
G/G
(frequency)
G/A
(frequency)
A/A
(frequency)
Caucasian
rs3024634
Sweden (I)
MS
CTR
0.14
0.15
0.86
0.85
19 (0.020)
33 (0.028)
242 (0.248)
299 (0.251)
713 (0.732)
860 (0.721)
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
A-Allele
G-Allele
A/A
(frequency)
A/G
(frequency)
G/G
(frequency)
Caucasian
rs3024668
Sweden (I)
MS
CTR
0.06
0.06
0.94
0.94
3 (0.003)
5 (0.004)
115 (0.115)
129 (0.107)
878 (0.882)
1073 (0.889)
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
A-Allele
T-Allele
A/A
(frequency)
A/T
(frequency)
T/T
(frequency)
Caucasian
rs3024698
Sweden (I)
MS
CTR
0.02
0.02
0.98
0.98
1 (0.001)
0 (0.000)
42 (0.043)
47 (0.040)
945 (0.956)
1135 (0.960)
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
T-Allele
C-Allele
T/T
(frequency)
T/C
(frequency)
C/C
(frequency)
Caucasian
rs3116578
Sweden (I)
MS
CTR
0.02
0.02
0.98
0.98
0 (0.000)
1 (0.001)
29 (0.032)
44 (0.040)
868 (0.968)
1060 (0.959)
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
C-Allele
T-Allele
C/C
(frequency)
C/T
(frequency)
T/T
(frequency)
Caucasian
rs4787423
Sweden (I)
MS
CTR
0.14
0.14
0.86
0.86
15 (0.015)
30 (0.026)
240 (0.246)
267 (0.234)
721 (0.739)
843 (0.739)
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
A-Allele
G-Allele
A/A
(frequency)
A/G
(frequency)
G/G
(frequency)
Caucasian
rs6498011
Sweden (I)
MS
CTR
0.37
0.37
0.63
0.63
133 (0.134)
164 (0.136)
464 (0.468)
557 (0.463)
395 (0.398)
481 (0.400)
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
C-Allele
G-Allele
C/C
(frequency)
C/G
(frequency)
G/G
(frequency)
Caucasian
rs8057585
Sweden (I)
MS
CTR
0.42
0.41
0.58
0.59
180 (0.183)
206 (0.174)
464 (0.473)
549 (0.464)
337 (0.344)
428 (0.362)
Case-Control Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
A-Allele
G-Allele
A/A
(frequency)
A/G
(frequency)
G/G
(frequency)
Caucasian
rs8832
Sweden (I)
MS
CTR
0.44
0.43
0.56
0.57
201 (0.203)
222 (0.188)
477 (0.482)
575 (0.488)
311 (0.314)
382 (0.324)
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MSGene Recent Updates
STAT3
MSGene Top Results
Top Results Details
1.
HLA-DRB1
2.
IL2RA
3.
IL7R
4.
TAGAP
5.
CLEC16A
6.
EVI5
7.
GWA_16q24.1
8.
GWA_5p13.1
9.
TTC34
10.
AHI1
[see more]
[close]
11.
GWA_3q24
12.
CD226
13.
CD5
14.
IL12B
15.
PLEK
16.
IL22RA2
17.
NCOA5
18.
STAT3
19.
GWA_2p21
20.
DKKL1
21.
CYP24A1
22.
TNFRSF1A
23.
TNFSF14
24.
CD86
25.
CD58
26.
GWA_3q12.3
27.
SH2B3
28.
SP140
29.
GPR65
30.
CYP27B1
31.
CD40
32.
MAPK1
33.
ZFP36L1
34.
AGAP2
35.
RPS6KB1
36.
SOX8
37.
MPV17L2
38.
PTPRK
39.
ZMIZ1
40.
PVR
41.
HHEX
42.
C1orf106
43.
PKIA
44.
BACH2
45.
MMEL1
46.
SLC30A7
47.
BATF
48.
KIF21B
49.
SAE1
50.
DLEU1
51.
MYC
52.
SYK
53.
RGS14
54.
DDAH1
55.
MERTK
56.
ZNF767
57.
CLECL1
58.
MANBA
59.
TYK2
60.
ZBTB46
61.
CDC37
62.
NDFIP1
63.
MAP3K14
64.
RGS1
65.
TMEM39A
66.
MALT1
67.
CARD11
68.
MAF
69.
IRF5
MSGene Stats
Studies: 789
Genes: 809
Polymorphisms: 2907
Meta-analyses: 324
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