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MSGene - Polymorphism Details
Study:
Mero, 2010
Gene:
CLEC16A
(Gop-1; KIAA0350; MGC111457)
Protein:
C-type lectin domain family 16, member A
Chromosome:
16
(View:
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
X
Y
MT
)
Status:
Updated 25 November 2011
Total number of polymorphisms investigated by this study: 49
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
G-Allele
A-Allele
G/G
(frequency)
G/A
(frequency)
A/A
(frequency)
Caucasian
rs6498169 (intron22)
Norway (I)
MS
CTR
0.41
0.35
0.59
0.65
135 (0.168)
129 (0.125)
389 (0.484)
470 (0.457)
280 (0.348)
429 (0.417)
rs6498169 (intron22)
Norway (II)
MS
CTR
0.41
0.37
0.59
0.63
198 (0.165)
277 (0.135)
579 (0.482)
954 (0.464)
424 (0.353)
823 (0.401)
rs6498169 (intron22)
Overlaps with IMSGC, 2007 (UK)
MS
CTR
-
-
-
-
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
A-Allele
G-Allele
A/A
(frequency)
A/G
(frequency)
G/G
(frequency)
Caucasian
rs2903692
Norway (I)
MS
CTR
0.29
0.33
0.71
0.67
66 (0.082)
111 (0.108)
329 (0.409)
453 (0.442)
409 (0.509)
462 (0.450)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
G-Allele
A-Allele
G/G
(frequency)
G/A
(frequency)
A/A
(frequency)
Caucasian
rs12708716 (intron19)
Norway (I)
MS
CTR
0.30
0.34
0.70
0.66
70 (0.087)
118 (0.115)
335 (0.417)
460 (0.448)
398 (0.496)
449 (0.437)
rs12708716 (intron19)
Norway (II)
MS
CTR
0.29
0.33
0.71
0.67
104 (0.087)
228 (0.111)
499 (0.415)
912 (0.444)
599 (0.498)
914 (0.445)
rs12708716 (intron19)
Overlaps with IMSGC, 2007 (UK)
MS
CTR
-
-
-
-
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
C-Allele
A-Allele
C/C
(frequency)
C/A
(frequency)
A/A
(frequency)
Caucasian
rs725613 (intron19)
Norway (I)
MS
CTR
0.30
0.33
0.70
0.67
70 (0.087)
115 (0.112)
335 (0.417)
457 (0.445)
398 (0.496)
456 (0.444)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
T-Allele
C-Allele
T/T
(frequency)
T/C
(frequency)
C/C
(frequency)
Caucasian
rs1035089 (intron1)
Norway (I)
MS
CTR
0.53
0.48
0.47
0.52
224 (0.279)
234 (0.228)
401 (0.499)
512 (0.499)
179 (0.223)
281 (0.274)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
A-Allele
G-Allele
A/A
(frequency)
A/G
(frequency)
G/G
(frequency)
Caucasian
rs11074952 (intron21)
Norway (I)
MS
CTR
0.30
0.32
0.70
0.68
72 (0.090)
103 (0.100)
337 (0.419)
445 (0.433)
395 (0.491)
479 (0.466)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
T-Allele
C-Allele
T/T
(frequency)
T/C
(frequency)
C/C
(frequency)
Caucasian
rs2041733 (intron22)
Norway (I)
MS
CTR
0.49
0.45
0.51
0.55
196 (0.244)
207 (0.202)
402 (0.500)
508 (0.495)
206 (0.256)
312 (0.304)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
T-Allele
C-Allele
T/T
(frequency)
T/C
(frequency)
C/C
(frequency)
Caucasian
rs2286975 (intron11)
Norway (I)
MS
CTR
0.23
0.27
0.77
0.73
43 (0.053)
76 (0.074)
285 (0.354)
407 (0.396)
477 (0.593)
544 (0.530)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
A-Allele
G-Allele
A/A
(frequency)
A/G
(frequency)
G/G
(frequency)
Caucasian
rs2302558 (intron3)
Norway (I)
MS
CTR
0.12
0.12
0.88
0.88
11 (0.014)
14 (0.014)
165 (0.205)
211 (0.205)
628 (0.781)
803 (0.781)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
A-Allele
C-Allele
A/A
(frequency)
A/C
(frequency)
C/C
(frequency)
Caucasian
rs3960630 (intron23)
Norway (I)
MS
CTR
0.25
0.27
0.75
0.73
52 (0.065)
73 (0.071)
305 (0.380)
402 (0.391)
446 (0.555)
552 (0.537)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
A-Allele
G-Allele
A/A
(frequency)
A/G
(frequency)
G/G
(frequency)
Caucasian
rs876457 (intron17)
Norway (I)
MS
CTR
0.07
0.08
0.93
0.92
4 (0.005)
6 (0.006)
101 (0.125)
144 (0.140)
700 (0.870)
877 (0.854)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
G-Allele
A-Allele
G/G
(frequency)
G/A
(frequency)
A/A
(frequency)
Caucasian
rs1035088 (intron1)
Norway (I)
MS
CTR
0.17
0.21
0.83
0.79
24 (0.030)
47 (0.046)
229 (0.285)
344 (0.335)
551 (0.685)
636 (0.619)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
A-Allele
G-Allele
A/A
(frequency)
A/G
(frequency)
G/G
(frequency)
Caucasian
rs11074945 (intron11)
Norway (I)
MS
CTR
0.13
0.13
0.87
0.87
14 (0.017)
16 (0.016)
182 (0.226)
226 (0.220)
609 (0.757)
785 (0.764)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
T-Allele
G-Allele
T/T
(frequency)
T/G
(frequency)
G/G
(frequency)
Caucasian
rs11640376 (intron23)
Norway (I)
MS
CTR
0.12
0.12
0.88
0.88
12 (0.015)
15 (0.015)
172 (0.214)
215 (0.209)
620 (0.771)
797 (0.776)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
G-Allele
T-Allele
G/G
(frequency)
G/T
(frequency)
T/T
(frequency)
Caucasian
rs11642009 (intron19)
Norway (I)
MS
CTR
0.20
0.24
0.80
0.76
33 (0.041)
61 (0.059)
259 (0.322)
379 (0.369)
512 (0.637)
587 (0.572)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
C-Allele
G-Allele
C/C
(frequency)
C/G
(frequency)
G/G
(frequency)
Caucasian
rs12917716 (intron19)
Norway (I)
MS
CTR
0.38
0.43
0.63
0.57
113 (0.141)
186 (0.181)
377 (0.469)
502 (0.488)
314 (0.391)
340 (0.331)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
A-Allele
G-Allele
A/A
(frequency)
A/G
(frequency)
G/G
(frequency)
Caucasian
rs12923849 (intron3)
Norway (I)
MS
CTR
0.12
0.17
0.88
0.83
11 (0.014)
29 (0.028)
169 (0.210)
288 (0.281)
624 (0.776)
709 (0.691)
rs12923849 (intron3)
Overlaps with IMSGC, 2007 (UK)
MS
CTR
0.16
0.18
0.84
0.82
28 (0.026)
61 (0.031)
295 (0.269)
570 (0.290)
774 (0.706)
1335 (0.679)
rs12923849 (intron3)
Norway (II)
MS
CTR
0.14
0.15
0.86
0.85
24 (0.020)
45 (0.022)
291 (0.242)
518 (0.252)
886 (0.738)
1491 (0.726)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
T-Allele
C-Allele
T/T
(frequency)
T/C
(frequency)
C/C
(frequency)
Caucasian
rs12927355 (intron19)
Norway (I)
MS
CTR
0.26
0.31
0.74
0.69
53 (0.066)
97 (0.094)
307 (0.382)
437 (0.426)
444 (0.552)
493 (0.480)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
G-Allele
A-Allele
G/G
(frequency)
G/A
(frequency)
A/A
(frequency)
Caucasian
rs13331231 (intron22)
Norway (I)
MS
CTR
0.15
0.16
0.85
0.84
18 (0.022)
27 (0.026)
203 (0.252)
280 (0.273)
584 (0.725)
719 (0.701)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
C-Allele
T-Allele
C/C
(frequency)
C/T
(frequency)
T/T
(frequency)
Caucasian
rs16957849 (intron5)
Norway (I)
MS
CTR
0.18
0.20
0.82
0.80
27 (0.034)
40 (0.039)
241 (0.300)
325 (0.316)
535 (0.666)
662 (0.645)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
C-Allele
T-Allele
C/C
(frequency)
C/T
(frequency)
T/T
(frequency)
Caucasian
rs16957895 (intron10)
Norway (I)
MS
CTR
0.26
0.28
0.74
0.72
56 (0.070)
78 (0.076)
313 (0.390)
410 (0.400)
434 (0.540)
538 (0.524)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
G-Allele
A-Allele
G/G
(frequency)
G/A
(frequency)
A/A
(frequency)
Caucasian
rs16958021 (intron19)
Norway (I)
MS
CTR
0.11
0.12
0.89
0.88
10 (0.012)
16 (0.016)
162 (0.202)
222 (0.216)
631 (0.786)
790 (0.768)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
T-Allele
A-Allele
T/T
(frequency)
T/A
(frequency)
A/A
(frequency)
Caucasian
rs16958028 (intron19)
Norway (I)
MS
CTR
0.10
0.11
0.90
0.89
8 (0.010)
12 (0.012)
147 (0.183)
198 (0.193)
648 (0.807)
817 (0.796)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
T-Allele
G-Allele
T/T
(frequency)
T/G
(frequency)
G/G
(frequency)
Caucasian
rs17604868 (intron20)
Norway (I)
MS
CTR
0.34
0.35
0.66
0.65
93 (0.116)
129 (0.126)
361 (0.449)
470 (0.458)
350 (0.435)
427 (0.416)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
A-Allele
G-Allele
A/A
(frequency)
A/G
(frequency)
G/G
(frequency)
Caucasian
rs17604903 (intron21)
Norway (I)
MS
CTR
0.05
0.05
0.95
0.95
2 (0.002)
2 (0.002)
78 (0.097)
90 (0.088)
724 (0.900)
935 (0.910)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
G-Allele
A-Allele
G/G
(frequency)
G/A
(frequency)
A/A
(frequency)
Caucasian
rs17673553 (intron22)
Norway (I)
MS
CTR
0.20
0.23
0.80
0.77
33 (0.041)
55 (0.054)
259 (0.322)
366 (0.356)
512 (0.637)
606 (0.590)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
G-Allele
A-Allele
G/G
(frequency)
G/A
(frequency)
A/A
(frequency)
Caucasian
rs17763452 (intron22)
Norway (I)
MS
CTR
0.10
0.11
0.90
0.89
8 (0.010)
12 (0.012)
141 (0.175)
199 (0.194)
656 (0.815)
815 (0.794)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
G-Allele
A-Allele
G/G
(frequency)
G/A
(frequency)
A/A
(frequency)
Caucasian
rs17803698 (intron7)
Norway (I)
MS
CTR
0.15
0.15
0.85
0.85
19 (0.024)
23 (0.022)
211 (0.262)
263 (0.256)
574 (0.714)
740 (0.721)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
A-Allele
G-Allele
A/A
(frequency)
A/G
(frequency)
G/G
(frequency)
Caucasian
rs17806299 (intron19)
Norway (I)
MS
CTR
0.14
0.17
0.86
0.83
15 (0.019)
30 (0.029)
189 (0.235)
290 (0.282)
600 (0.746)
708 (0.689)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
A-Allele
G-Allele
A/A
(frequency)
A/G
(frequency)
G/G
(frequency)
Caucasian
rs2286973 (exon19)
Norway (I)
MS
CTR
0.36
0.40
0.64
0.60
102 (0.127)
161 (0.157)
369 (0.459)
491 (0.478)
333 (0.414)
375 (0.365)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
T-Allele
A-Allele
T/T
(frequency)
T/A
(frequency)
A/A
(frequency)
Caucasian
rs3813754 (intron3)
Norway (I)
MS
CTR
0.15
0.16
0.85
0.84
18 (0.022)
27 (0.026)
203 (0.252)
277 (0.270)
584 (0.725)
723 (0.704)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
T-Allele
G-Allele
T/T
(frequency)
T/G
(frequency)
G/G
(frequency)
Caucasian
rs6498168 (intron22)
Norway (I)
MS
CTR
0.41
0.35
0.59
0.65
134 (0.167)
124 (0.121)
389 (0.484)
466 (0.454)
281 (0.350)
437 (0.426)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
A-Allele
T-Allele
A/A
(frequency)
A/T
(frequency)
T/T
(frequency)
Caucasian
rs7185978 (intron11)
Norway (I)
MS
CTR
0.14
0.14
0.86
0.86
16 (0.020)
21 (0.020)
194 (0.241)
250 (0.243)
595 (0.739)
756 (0.736)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
G-Allele
C-Allele
G/G
(frequency)
G/C
(frequency)
C/C
(frequency)
Caucasian
rs7200940 (intron19)
Norway (I)
MS
CTR
0.26
0.31
0.74
0.69
56 (0.070)
100 (0.097)
312 (0.388)
441 (0.429)
436 (0.542)
486 (0.473)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
G-Allele
C-Allele
G/G
(frequency)
G/C
(frequency)
C/C
(frequency)
Caucasian
rs7206912 (intron22)
Norway (I)
MS
CTR
0.47
0.40
0.53
0.60
176 (0.219)
168 (0.164)
400 (0.498)
495 (0.482)
228 (0.284)
364 (0.354)
rs7206912 (intron22)
Overlaps with IMSGC, 2007 (UK)
MS
CTR
0.39
0.37
0.61
0.63
168 (0.153)
265 (0.135)
522 (0.476)
913 (0.464)
407 (0.371)
788 (0.401)
rs7206912 (intron22)
Norway (II)
MS
CTR
0.46
0.41
0.54
0.59
254 (0.211)
350 (0.170)
597 (0.497)
996 (0.485)
350 (0.291)
708 (0.345)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
C-Allele
T-Allele
C/C
(frequency)
C/T
(frequency)
T/T
(frequency)
Caucasian
rs7403919 (intron10)
Norway (I)
MS
CTR
0.32
0.35
0.68
0.65
80 (0.100)
125 (0.122)
347 (0.432)
467 (0.455)
377 (0.469)
435 (0.424)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
C-Allele
T-Allele
C/C
(frequency)
C/T
(frequency)
T/T
(frequency)
Caucasian
rs741175 (intron19)
Norway (I)
MS
CTR
0.36
0.40
0.64
0.60
105 (0.131)
168 (0.163)
371 (0.461)
495 (0.482)
328 (0.408)
365 (0.355)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
T-Allele
G-Allele
T/T
(frequency)
T/G
(frequency)
G/G
(frequency)
Caucasian
rs767019 (intron22)
Norway (I)
MS
CTR
0.36
0.40
0.64
0.60
105 (0.131)
168 (0.163)
371 (0.461)
495 (0.482)
328 (0.408)
365 (0.355)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
C-Allele
T-Allele
C/C
(frequency)
C/T
(frequency)
T/T
(frequency)
Caucasian
rs8048002 (intron3)
Norway (I)
MS
CTR
0.06
0.06
0.94
0.94
3 (0.004)
4 (0.004)
95 (0.118)
116 (0.113)
706 (0.878)
907 (0.883)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
C-Allele
G-Allele
C/C
(frequency)
C/G
(frequency)
G/G
(frequency)
Caucasian
rs8050144 (intron10)
Norway (I)
MS
CTR
0.50
0.45
0.50
0.55
203 (0.252)
210 (0.204)
402 (0.500)
509 (0.496)
199 (0.248)
308 (0.300)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
A-Allele
G-Allele
A/A
(frequency)
A/G
(frequency)
G/G
(frequency)
Caucasian
rs8055876 (intron1)
Norway (I)
MS
CTR
0.09
0.10
0.91
0.90
6 (0.007)
11 (0.011)
126 (0.157)
191 (0.186)
672 (0.836)
824 (0.803)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
G-Allele
C-Allele
G/G
(frequency)
G/C
(frequency)
C/C
(frequency)
Caucasian
rs8060411 (intron20)
Norway (I)
MS
CTR
0.41
0.36
0.59
0.64
138 (0.172)
132 (0.129)
390 (0.485)
473 (0.461)
276 (0.343)
422 (0.411)
rs8060411 (intron20)
Norway (II)
MS
CTR
0.41
0.37
0.59
0.63
200 (0.167)
287 (0.140)
580 (0.483)
962 (0.468)
421 (0.351)
805 (0.392)
rs8060411 (intron20)
Overlaps with IMSGC, 2007 (UK)
MS
CTR
0.37
0.34
0.63
0.66
149 (0.136)
233 (0.119)
511 (0.466)
887 (0.451)
437 (0.398)
846 (0.430)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
C-Allele
G-Allele
C/C
(frequency)
C/G
(frequency)
G/G
(frequency)
Caucasian
rs8061882 (intron19)
Norway (I)
MS
CTR
0.14
0.16
0.86
0.84
15 (0.019)
26 (0.025)
190 (0.236)
273 (0.266)
599 (0.745)
728 (0.709)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
G-Allele
A-Allele
G/G
(frequency)
G/A
(frequency)
A/A
(frequency)
Caucasian
rs887864 (intron19)
Norway (I)
MS
CTR
0.30
0.33
0.70
0.67
73 (0.091)
115 (0.112)
338 (0.420)
457 (0.445)
393 (0.489)
456 (0.444)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
C-Allele
G-Allele
C/C
(frequency)
C/G
(frequency)
G/G
(frequency)
Caucasian
rs9923455 (intron13)
Norway (I)
MS
CTR
0.35
0.39
0.65
0.61
101 (0.125)
156 (0.152)
368 (0.457)
489 (0.476)
336 (0.417)
382 (0.372)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
C-Allele
T-Allele
C/C
(frequency)
C/T
(frequency)
T/T
(frequency)
Caucasian
rs9923856 (intron19)
Norway (I)
MS
CTR
0.27
0.29
0.73
0.71
59 (0.073)
89 (0.087)
318 (0.396)
427 (0.416)
426 (0.531)
510 (0.497)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
C-Allele
T-Allele
C/C
(frequency)
C/T
(frequency)
T/T
(frequency)
Caucasian
rs9926367 (intron10)
Norway (I)
MS
CTR
0.24
0.29
0.76
0.71
47 (0.058)
85 (0.083)
294 (0.366)
421 (0.410)
463 (0.576)
521 (0.507)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
G-Allele
C-Allele
G/G
(frequency)
G/C
(frequency)
C/C
(frequency)
Caucasian
rs9934231 (intron10)
Norway (I)
MS
CTR
0.39
0.45
0.61
0.55
122 (0.152)
208 (0.203)
383 (0.476)
508 (0.495)
299 (0.372)
311 (0.303)
rs9934231 (intron10)
Norway (II)
MS
CTR
0.42
0.45
0.58
0.55
212 (0.177)
412 (0.201)
585 (0.487)
1016 (0.495)
404 (0.336)
626 (0.305)
rs9934231 (intron10)
Overlaps with IMSGC, 2007 (UK)
MS
CTR
0.45
0.48
0.55
0.52
222 (0.202)
451 (0.229)
543 (0.495)
981 (0.499)
332 (0.303)
534 (0.272)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Case-Control Studies (by ethnic group)
Genotypes*
Polymorphism ID#
(Link to NCBI)
Population
C-Allele
T-Allele
C/C
(frequency)
C/T
(frequency)
T/T
(frequency)
Caucasian
rs9939298 (intron18)
Norway (I)
MS
CTR
0.10
0.11
0.90
0.89
8 (0.010)
12 (0.012)
146 (0.182)
195 (0.190)
650 (0.808)
821 (0.799)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Family-Based Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
G-Allele
A-Allele
G/G
(frequency)
G/A
(frequency)
A/A
(frequency)
Caucasian
rs6498169 (intron22)
UK
MS
CTR
-
-
-
-
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
(-)
: Either no data provided, or data otherwise not eligible for inclusion (
see methods for details)
.
Family-Based Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
G-Allele
A-Allele
G/G
(frequency)
G/A
(frequency)
A/A
(frequency)
Caucasian
rs12708716 (intron19)
UK
MS
CTR
-
-
-
-
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
(-)
: Either no data provided, or data otherwise not eligible for inclusion (
see methods for details)
.
Family-Based Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
A-Allele
G-Allele
A/A
(frequency)
A/G
(frequency)
G/G
(frequency)
Caucasian
rs12923849 (intron3)
UK
MS
CTR
-
-
-
-
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
(-)
: Either no data provided, or data otherwise not eligible for inclusion (
see methods for details)
.
Family-Based Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
G-Allele
C-Allele
G/G
(frequency)
G/C
(frequency)
C/C
(frequency)
Caucasian
rs7206912 (intron22)
UK
MS
CTR
-
-
-
-
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
(-)
: Either no data provided, or data otherwise not eligible for inclusion (
see methods for details)
.
Family-Based Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
G-Allele
C-Allele
G/G
(frequency)
G/C
(frequency)
C/C
(frequency)
Caucasian
rs8060411 (intron20)
UK
MS
CTR
-
-
-
-
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
(-)
: Either no data provided, or data otherwise not eligible for inclusion (
see methods for details)
.
Family-Based Studies (by ethnic group)
Genotypes
Polymorphism ID#
(Link to NCBI)
Population
G-Allele
C-Allele
G/G
(frequency)
G/C
(frequency)
C/C
(frequency)
Caucasian
rs9934231 (intron10)
UK
MS
CTR
-
-
-
-
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
(-)
: Either no data provided, or data otherwise not eligible for inclusion (
see methods for details)
.
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STAT3
MSGene Top Results
Top Results Details
1.
HLA-DRB1
2.
IL2RA
3.
IL7R
4.
TAGAP
5.
CLEC16A
6.
EVI5
7.
GWA_16q24.1
8.
GWA_5p13.1
9.
TTC34
10.
AHI1
[see more]
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11.
GWA_3q24
12.
CD226
13.
CD5
14.
IL12B
15.
PLEK
16.
IL22RA2
17.
NCOA5
18.
STAT3
19.
GWA_2p21
20.
DKKL1
21.
CYP24A1
22.
TNFRSF1A
23.
TNFSF14
24.
CD86
25.
CD58
26.
GWA_3q12.3
27.
SH2B3
28.
SP140
29.
GPR65
30.
CYP27B1
31.
CD40
32.
MAPK1
33.
ZFP36L1
34.
AGAP2
35.
RPS6KB1
36.
SOX8
37.
MPV17L2
38.
PTPRK
39.
ZMIZ1
40.
PVR
41.
HHEX
42.
C1orf106
43.
PKIA
44.
BACH2
45.
MMEL1
46.
SLC30A7
47.
BATF
48.
KIF21B
49.
SAE1
50.
DLEU1
51.
MYC
52.
SYK
53.
RGS14
54.
DDAH1
55.
MERTK
56.
ZNF767
57.
CLECL1
58.
MANBA
59.
TYK2
60.
ZBTB46
61.
CDC37
62.
NDFIP1
63.
MAP3K14
64.
RGS1
65.
TMEM39A
66.
MALT1
67.
CARD11
68.
MAF
69.
IRF5
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Studies: 789
Genes: 809
Polymorphisms: 2907
Meta-analyses: 324
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