Multiple Sclerosis Discovery Forum
  News and Future Directions
  Papers
  Forums
  Professional Resources
  Research Resources
MSGene - Polymorphism Details
Back Search Methods Disclaimer Credits
 Study: Nischwitz, 2010
 Gene: CLEC16A  (Gop-1; KIAA0350; MGC111457)  Entrez Gene
 Protein: C-type lectin domain family 16, member A   ProteinLink
 Chromosome: 16   (View: 1  2  3  4  5  6  7  8  9  10  11  12  13  14  15  16  17  18  19  20  21  22  X  Y  MT)
 Status: Updated 25 November 2011
Meta-Analysis     Gene Overview
Total number of polymorphisms investigated by this study: 31

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   A-Allele G-Allele A/A
(frequency)		 A/G
(frequency)		 G/G
(frequency)
 Caucasian
rs876476 Germany MS
CTR		 0.28
0.30		 0.72
0.70		 46 (0.076)
75 (0.091)		 240 (0.398)
348 (0.422)		 317 (0.526)
402 (0.487)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   C-Allele A-Allele C/C
(frequency)		 C/A
(frequency)		 A/A
(frequency)
 Caucasian
rs725613 (intron19) Germany MS
CTR		 0.33
0.39		 0.67
0.61		 64 (0.106)
128 (0.155)		 265 (0.439)
394 (0.478)		 275 (0.455)
303 (0.367)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   C-Allele T-Allele C/C
(frequency)		 C/T
(frequency)		 T/T
(frequency)
 Caucasian
rs7404554 Germany MS
CTR		 0.45
0.40		 0.55
0.60		 122 (0.202)
134 (0.162)		 298 (0.494)
397 (0.481)		 183 (0.303)
294 (0.356)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   C-Allele T-Allele C/C
(frequency)		 C/T
(frequency)		 T/T
(frequency)
 Caucasian
rs1003603 Germany MS
CTR		 0.39
0.44		 0.61
0.56		 91 (0.151)
160 (0.194)		 286 (0.474)
407 (0.493)		 226 (0.375)
258 (0.313)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   T-Allele C-Allele T/T
(frequency)		 T/C
(frequency)		 C/C
(frequency)
 Caucasian
rs1035089 (intron1) Germany MS
CTR		 0.49
0.44		 0.51
0.56		 142 (0.235)
156 (0.189)		 301 (0.499)
406 (0.492)		 160 (0.265)
263 (0.319)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   A-Allele G-Allele A/A
(frequency)		 A/G
(frequency)		 G/G
(frequency)
 Caucasian
rs11074952 (intron21) Germany MS
CTR		 0.28
0.26		 0.72
0.74		 46 (0.076)
58 (0.070)		 242 (0.401)
321 (0.389)		 315 (0.522)
446 (0.541)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   G-Allele T-Allele G/G
(frequency)		 G/T
(frequency)		 T/T
(frequency)
 Caucasian
rs12925474 Germany MS
CTR		 0.71
0.08		 0.29
0.92		 300 (0.498)
6 (0.007)		 251 (0.416)
124 (0.150)		 52 (0.086)
695 (0.842)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   C-Allele T-Allele C/C
(frequency)		 C/T
(frequency)		 T/T
(frequency)
 Caucasian
rs16957976 Germany MS
CTR		 0.11
0.08		 0.89
0.92		 7 (0.012)
6 (0.007)		 113 (0.187)
128 (0.155)		 483 (0.801)
691 (0.838)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   G-Allele T-Allele G/G
(frequency)		 G/T
(frequency)		 T/T
(frequency)
 Caucasian
rs16958108 Germany MS
CTR		 0.12
0.12		 0.88
0.88		 8 (0.013)
11 (0.013)		 124 (0.206)
168 (0.204)		 471 (0.781)
646 (0.783)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   A-Allele G-Allele A/A
(frequency)		 A/G
(frequency)		 G/G
(frequency)
 Caucasian
rs2040 Germany MS
CTR		 0.08
0.09		 0.92
0.91		 4 (0.007)
7 (0.008)		 91 (0.151)
134 (0.162)		 508 (0.842)
685 (0.829)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   T-Allele C-Allele T/T
(frequency)		 T/C
(frequency)		 C/C
(frequency)
 Caucasian
rs2041670 Germany MS
CTR		 0.29
0.36		 0.71
0.64		 51 (0.085)
108 (0.131)		 248 (0.411)
381 (0.461)		 304 (0.504)
337 (0.408)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   T-Allele C-Allele T/T
(frequency)		 T/C
(frequency)		 C/C
(frequency)
 Caucasian
rs2041733 (intron22) Germany MS
CTR		 0.48
0.44		 0.52
0.56		 137 (0.227)
160 (0.194)		 301 (0.499)
407 (0.493)		 165 (0.274)
258 (0.313)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   A-Allele G-Allele A/A
(frequency)		 A/G
(frequency)		 G/G
(frequency)
 Caucasian
rs2080272 Germany MS
CTR		 0.39
0.34		 0.61
0.66		 94 (0.156)
94 (0.114)		 288 (0.478)
369 (0.447)		 221 (0.367)
363 (0.439)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   T-Allele C-Allele T/T
(frequency)		 T/C
(frequency)		 C/C
(frequency)
 Caucasian
rs2286975 (intron11) Germany MS
CTR		 0.27
0.29		 0.73
0.71		 45 (0.075)
71 (0.086)		 240 (0.398)
342 (0.415)		 318 (0.527)
411 (0.499)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   A-Allele G-Allele A/A
(frequency)		 A/G
(frequency)		 G/G
(frequency)
 Caucasian
rs2302558 (intron3) Germany MS
CTR		 0.11
0.14		 0.89
0.86		 8 (0.013)
17 (0.021)		 122 (0.202)
201 (0.244)		 473 (0.784)
607 (0.736)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   G-Allele A-Allele G/G
(frequency)		 G/A
(frequency)		 A/A
(frequency)
 Caucasian
rs3901386 Germany MS
CTR		 0.39
0.45		 0.61
0.55		 93 (0.154)
165 (0.200)		 287 (0.476)
408 (0.495)		 223 (0.370)
252 (0.305)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   A-Allele C-Allele A/A
(frequency)		 A/C
(frequency)		 C/C
(frequency)
 Caucasian
rs3960630 (intron23) Germany MS
CTR		 0.21
0.22		 0.79
0.78		 28 (0.046)
39 (0.047)		 203 (0.336)
280 (0.339)		 373 (0.618)
506 (0.613)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   G-Allele A-Allele G/G
(frequency)		 G/A
(frequency)		 A/A
(frequency)
 Caucasian
rs42369 Germany MS
CTR		 0.40
0.36		 0.60
0.64		 96 (0.159)
104 (0.126)		 289 (0.479)
378 (0.458)		 218 (0.362)
343 (0.416)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   G-Allele A-Allele G/G
(frequency)		 G/A
(frequency)		 A/A
(frequency)
 Caucasian
rs4781025 Germany MS
CTR		 0.46
0.42		 0.54
0.58		 130 (0.216)
143 (0.174)		 300 (0.498)
401 (0.487)		 173 (0.287)
280 (0.340)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   G-Allele A-Allele G/G
(frequency)		 G/A
(frequency)		 A/A
(frequency)
 Caucasian
rs7185300 Germany MS
CTR		 0.05
0.04		 0.95
0.96		 2 (0.003)
1 (0.001)		 58 (0.096)
56 (0.068)		 543 (0.900)
768 (0.931)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   A-Allele C-Allele A/A
(frequency)		 A/C
(frequency)		 C/C
(frequency)
 Caucasian
rs7192790 Germany MS
CTR		 0.19
0.24		 0.81
0.76		 22 (0.036)
47 (0.057)		 186 (0.308)
299 (0.362)		 395 (0.655)
479 (0.581)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   T-Allele C-Allele T/T
(frequency)		 T/C
(frequency)		 C/C
(frequency)
 Caucasian
rs7194545 Germany MS
CTR		 0.17
0.19		 0.83
0.81		 18 (0.030)
31 (0.038)		 173 (0.287)
259 (0.314)		 411 (0.683)
535 (0.648)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   A-Allele G-Allele A/A
(frequency)		 A/G
(frequency)		 G/G
(frequency)
 Caucasian
rs7197758 Germany MS
CTR		 0.25
0.29		 0.75
0.71		 38 (0.063)
70 (0.085)		 227 (0.377)
341 (0.413)		 337 (0.560)
414 (0.502)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   G-Allele A-Allele G/G
(frequency)		 G/A
(frequency)		 A/A
(frequency)
 Caucasian
rs7201845 Germany MS
CTR		 0.22
0.24		 0.78
0.76		 29 (0.048)
49 (0.059)		 206 (0.342)
304 (0.368)		 368 (0.610)
472 (0.572)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   C-Allele T-Allele C/C
(frequency)		 C/T
(frequency)		 T/T
(frequency)
 Caucasian
rs741176 Germany MS
CTR		 0.11
0.14		 0.89
0.86		 8 (0.013)
17 (0.021)		 121 (0.201)
201 (0.244)		 474 (0.786)
607 (0.736)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   G-Allele A-Allele G/G
(frequency)		 G/A
(frequency)		 A/A
(frequency)
 Caucasian
rs8055123 Germany MS
CTR		 0.14
0.15		 0.86
0.85		 13 (0.022)
19 (0.023)		 149 (0.247)
210 (0.255)		 442 (0.732)
596 (0.722)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   T-Allele C-Allele T/T
(frequency)		 T/C
(frequency)		 C/C
(frequency)
 Caucasian
rs8055893 Germany MS
CTR		 0.11
0.14		 0.89
0.86		 7 (0.012)
17 (0.021)		 118 (0.196)
201 (0.244)		 478 (0.793)
607 (0.736)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   G-Allele A-Allele G/G
(frequency)		 G/A
(frequency)		 A/A
(frequency)
 Caucasian
rs8059260 Germany MS
CTR		 0.15
0.17		 0.85
0.83		 13 (0.022)
24 (0.029)		 150 (0.249)
233 (0.282)		 440 (0.730)
568 (0.688)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   A-Allele G-Allele A/A
(frequency)		 A/G
(frequency)		 G/G
(frequency)
 Caucasian
rs876457 (intron17) Germany MS
CTR		 0.06
0.05		 0.94
0.95		 2 (0.003)
2 (0.002)		 72 (0.120)
84 (0.102)		 528 (0.877)
738 (0.896)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   G-Allele A-Allele G/G
(frequency)		 G/A
(frequency)		 A/A
(frequency)
 Caucasian
rs9940096 Germany MS
CTR		 0.11
0.14		 0.89
0.86		 7 (0.012)
16 (0.019)		 116 (0.192)
199 (0.241)		 480 (0.796)
610 (0.739)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)		 Population   A-Allele G-Allele A/A
(frequency)		 A/G
(frequency)		 G/G
(frequency)
 Caucasian
rs998592 Germany MS
CTR		 0.39
0.45		 0.61
0.55		 93 (0.154)
167 (0.202)		 288 (0.478)
408 (0.495)		 222 (0.368)
250 (0.303)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.
Print this page
Email this page
MSDF RSS

Text size
Share & Bookmark
MSGene Recent Updates
MSGene Top Results
Top Results Details
1. HLA-DRB1
2. IL2RA
3. IL7R
4. TAGAP
5. CLEC16A
6. EVI5
7. GWA_16q24.1
8. GWA_5p13.1
9. TTC34
10. AHI1   
[see more]
MSGene Stats
Studies: 789
Genes: 809
Polymorphisms: 2907
Meta-analyses: 324
ALSGene
AlzGene
MSGene
PDGene
SZGene
An up-to-date collection of all published genetic association studies.
Copyright © 2024 Biomedical Research Forum LLC Disclaimer Copyright