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MSGene - Polymorphism Details
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 Study: IMSGC, 2009
 Gene: CLEC16A  (Gop-1; KIAA0350; MGC111457)  Entrez Gene
 Protein: C-type lectin domain family 16, member A   ProteinLink
 Chromosome: 16   (View: 1  2  3  4  5  6  7  8  9  10  11  12  13  14  15  16  17  18  19  20  21  22  X  Y  MT)
 Status: Updated 25 November 2011
Meta-Analysis     Gene Overview
Total number of polymorphisms investigated by this study: 1

Case-Control Studies (by ethnic group)
  Genotypes*
Polymorphism ID#
(Link to NCBI)
Population   G-Allele A-Allele G/G
(frequency)
G/A
(frequency)
A/A
(frequency)
 Caucasian
rs12708716 (intron19) Belgium MS
CTR
0.34
0.39
0.66
0.61
47 (0.118)
69 (0.150)
179 (0.450)
219 (0.475)
172 (0.432)
173 (0.375)
rs12708716 (intron19) Overlaps with Mero, 2010 (Norway) MS
CTR
-
-
-
-
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
rs12708716 (intron19) Sweden MS
CTR
0.28
0.33
0.72
0.67
77 (0.076)
125 (0.107)
404 (0.398)
516 (0.440)
533 (0.526)
532 (0.454)
rs12708716 (intron19) UK MS
CTR
0.31
0.35
0.69
0.65
232 (0.098)
882 (0.125)
1019 (0.430)
3233 (0.457)
1119 (0.472)
2963 (0.419)
rs12708716 (intron19) USA MS
CTR
0.32
0.34
0.68
0.66
136 (0.104)
63 (0.112)
572 (0.436)
251 (0.447)
603 (0.460)
247 (0.440)
*Genotypes have been calculated from allele frequencies assuming Hardy-Weinberg equilibrium.

Family-Based Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   G-Allele A-Allele G/G
(frequency)
G/A
(frequency)
A/A
(frequency)
 Caucasian
rs12708716 (intron19) Australia MS
CTR
-
-
-
-
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
rs12708716 (intron19) Belgium MS
CTR
-
-
-
-
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
rs12708716 (intron19) UK MS
CTR
-
-
-
-
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
rs12708716 (intron19) USA MS
CTR
-
-
-
-
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
(-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details).
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MSGene Recent Updates
MSGene Top Results
Top Results Details
1. HLA-DRB1
2. IL2RA
3. IL7R
4. TAGAP
5. CLEC16A
6. EVI5
7. GWA_16q24.1
8. GWA_5p13.1
9. TTC34
10. AHI1   
[see more]
MSGene Stats
Studies: 789
Genes: 809
Polymorphisms: 2907
Meta-analyses: 324
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