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MSGene - Polymorphism Details
Back Search Methods Disclaimer Credits
 Study: Kallio, 2009
 Gene: C7 
 Protein: complement component 7(complement component C7)
 Chromosome: 5   (View: 1  2  3  4  5  6  7  8  9  10  11  12  13  14  15  16  17  18  19  20  21  22  X  Y  MT)
 Status: Updated 25 November 2011
Meta-Analysis     Gene Overview
Total number of polymorphisms investigated by this study: 13

Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   A-Allele C-Allele A/A
(frequency)
A/C
(frequency)
C/C
(frequency)
 Caucasian
rs1055021 Finland (isolate) MS
CTR
0.16
0.10
0.84
0.90
7 (0.042)
6 (0.016)
40 (0.240)
60 (0.165)
120 (0.719)
298 (0.819)
rs1055021 Finland (other) MS
CTR
0.09
0.08
0.91
0.92
3 (0.004)
5 (0.005)
121 (0.167)
141 (0.152)
600 (0.829)
780 (0.842)
rs1055021 Norway MS
CTR
0.09
0.10
0.91
0.90
4 (0.011)
3 (0.007)
52 (0.149)
85 (0.188)
292 (0.839)
365 (0.806)
rs1055021 Sweden MS
CTR
0.10
0.08
0.90
0.92
8 (0.012)
4 (0.006)
106 (0.165)
89 (0.139)
527 (0.822)
545 (0.854)
rs1055021 USA MS
CTR
0.12
0.09
0.88
0.91
15 (0.017)
2 (0.012)
188 (0.215)
25 (0.148)
671 (0.768)
142 (0.840)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   C-Allele A-Allele C/C
(frequency)
C/A
(frequency)
A/A
(frequency)
 Caucasian
rs13157656 Finland (isolate) MS
CTR
0.15
0.19
0.85
0.81
1 (0.006)
10 (0.028)
50 (0.296)
118 (0.328)
118 (0.698)
232 (0.644)
rs13157656 Finland (other) MS
CTR
0.22
0.24
0.78
0.76
27 (0.037)
49 (0.052)
263 (0.364)
355 (0.379)
432 (0.598)
533 (0.569)
rs13157656 Norway MS
CTR
0.26
0.21
0.74
0.79
21 (0.061)
25 (0.054)
138 (0.398)
146 (0.318)
188 (0.542)
288 (0.627)
rs13157656 Sweden MS
CTR
0.23
0.23
0.77
0.77
30 (0.049)
41 (0.065)
220 (0.357)
204 (0.322)
366 (0.594)
388 (0.613)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   G-Allele T-Allele G/G
(frequency)
G/T
(frequency)
T/T
(frequency)
 Caucasian
rs13161930 Finland (isolate) MS
CTR
0.30
0.26
0.70
0.74
19 (0.112)
27 (0.075)
63 (0.371)
136 (0.379)
88 (0.518)
196 (0.546)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   A-Allele G-Allele A/A
(frequency)
A/G
(frequency)
G/G
(frequency)
 Caucasian
rs1376174 Finland (isolate) MS
CTR
0.19
0.16
0.81
0.84
10 (0.059)
9 (0.025)
43 (0.253)
99 (0.274)
117 (0.688)
253 (0.701)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   C-Allele T-Allele C/C
(frequency)
C/T
(frequency)
T/T
(frequency)
 Caucasian
rs1901167 Finland (isolate) MS
CTR
0.32
0.26
0.68
0.74
18 (0.106)
34 (0.094)
72 (0.424)
120 (0.333)
80 (0.471)
206 (0.572)
rs1901167 Finland (other) MS
CTR
0.22
0.25
0.78
0.75
37 (0.051)
68 (0.072)
251 (0.347)
333 (0.353)
436 (0.602)
542 (0.575)
rs1901167 Norway MS
CTR
0.19
0.24
0.81
0.76
16 (0.046)
30 (0.065)
100 (0.286)
166 (0.358)
234 (0.669)
268 (0.578)
rs1901167 Sweden MS
CTR
0.22
0.24
0.78
0.76
36 (0.058)
30 (0.047)
199 (0.321)
245 (0.383)
384 (0.620)
364 (0.570)
rs1901167 USA MS
CTR
0.23
0.21
0.77
0.79
51 (0.059)
10 (0.057)
305 (0.352)
53 (0.301)
511 (0.589)
113 (0.642)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   T-Allele C-Allele T/T
(frequency)
T/C
(frequency)
C/C
(frequency)
 Caucasian
rs2122564 Finland (isolate) MS
CTR
0.44
0.48
0.56
0.52
35 (0.207)
83 (0.229)
78 (0.462)
186 (0.512)
56 (0.331)
94 (0.259)
rs2122564 Finland (other) MS
CTR
0.49
0.45
0.51
0.55
162 (0.223)
183 (0.194)
382 (0.527)
473 (0.502)
181 (0.250)
286 (0.304)
rs2122564 Norway MS
CTR
0.43
0.42
0.57
0.58
61 (0.174)
71 (0.155)
182 (0.520)
247 (0.538)
107 (0.306)
141 (0.307)
rs2122564 Sweden MS
CTR
0.44
0.45
0.56
0.55
134 (0.211)
140 (0.220)
293 (0.461)
296 (0.465)
208 (0.328)
201 (0.316)
rs2122564 USA MS
CTR
0.41
0.40
0.59
0.60
149 (0.170)
31 (0.180)
419 (0.479)
75 (0.436)
306 (0.350)
66 (0.384)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   A-Allele G-Allele A/A
(frequency)
A/G
(frequency)
G/G
(frequency)
 Caucasian
rs324061 Finland (isolate) MS
CTR
0.23
0.26
0.77
0.74
7 (0.041)
26 (0.071)
65 (0.382)
136 (0.374)
98 (0.576)
202 (0.555)
rs324061 Finland (other) MS
CTR
0.26
0.22
0.74
0.78
42 (0.058)
46 (0.049)
298 (0.411)
328 (0.347)
385 (0.531)
572 (0.605)
rs324061 Norway MS
CTR
0.25
0.27
0.75
0.73
18 (0.051)
35 (0.075)
143 (0.407)
176 (0.379)
190 (0.541)
253 (0.545)
rs324061 Sweden MS
CTR
0.24
0.23
0.76
0.77
37 (0.058)
36 (0.056)
231 (0.364)
221 (0.345)
367 (0.578)
384 (0.599)
rs324061 USA MS
CTR
0.24
0.22
0.76
0.78
51 (0.058)
11 (0.064)
312 (0.357)
54 (0.314)
510 (0.584)
107 (0.622)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   T-Allele C-Allele T/T
(frequency)
T/C
(frequency)
C/C
(frequency)
 Caucasian
rs3805221 Finland (isolate) MS
CTR
0.17
0.21
0.83
0.79
1 (0.006)
14 (0.038)
57 (0.335)
126 (0.346)
112 (0.659)
224 (0.615)
rs3805221 Finland (other) MS
CTR
0.24
0.27
0.76
0.73
36 (0.050)
63 (0.067)
283 (0.390)
384 (0.408)
406 (0.560)
495 (0.525)
rs3805221 Norway MS
CTR
0.27
0.22
0.73
0.78
23 (0.066)
27 (0.059)
141 (0.405)
150 (0.325)
184 (0.529)
284 (0.616)
rs3805221 Sweden MS
CTR
0.25
0.25
0.75
0.75
36 (0.056)
44 (0.069)
243 (0.381)
228 (0.355)
359 (0.563)
370 (0.576)
rs3805221 USA MS
CTR
0.24
0.30
0.76
0.70
58 (0.066)
16 (0.093)
308 (0.351)
72 (0.419)
511 (0.583)
84 (0.488)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   G-Allele A-Allele G/G
(frequency)
G/A
(frequency)
A/A
(frequency)
 Caucasian
rs3805226 Finland (isolate) MS
CTR
0.16
0.10
0.84
0.90
7 (0.041)
6 (0.017)
40 (0.235)
60 (0.166)
123 (0.724)
296 (0.818)
rs3805226 Finland (other) MS
CTR
0.09
0.08
0.91
0.92
3 (0.004)
5 (0.005)
121 (0.167)
134 (0.143)
599 (0.828)
801 (0.852)
rs3805226 Norway MS
CTR
0.09
0.10
0.91
0.90
4 (0.011)
3 (0.007)
54 (0.155)
87 (0.190)
290 (0.833)
368 (0.803)
rs3805226 Sweden MS
CTR
0.09
0.07
0.91
0.93
7 (0.012)
4 (0.006)
92 (0.157)
88 (0.137)
486 (0.831)
549 (0.856)
rs3805226 USA MS
CTR
0.13
0.10
0.87
0.90
16 (0.018)
2 (0.011)
191 (0.217)
30 (0.171)
674 (0.765)
143 (0.817)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   T-Allele G-Allele T/T
(frequency)
T/G
(frequency)
G/G
(frequency)
 Caucasian
rs3828511 Finland (isolate) MS
CTR
0.16
0.10
0.84
0.90
7 (0.041)
6 (0.016)
40 (0.235)
61 (0.168)
123 (0.724)
297 (0.816)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   T-Allele C-Allele T/T
(frequency)
T/C
(frequency)
C/C
(frequency)
 Caucasian
rs4957361 Finland (isolate) MS
CTR
0.32
0.31
0.68
0.69
17 (0.100)
38 (0.105)
75 (0.441)
146 (0.404)
78 (0.459)
177 (0.490)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   T-Allele G-Allele T/T
(frequency)
T/G
(frequency)
G/G
(frequency)
 Caucasian
rs6860438 Finland (isolate) MS
CTR
0.31
0.39
0.69
0.61
17 (0.101)
55 (0.152)
71 (0.420)
168 (0.465)
81 (0.479)
138 (0.382)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   A-Allele G-Allele A/A
(frequency)
A/G
(frequency)
G/G
(frequency)
 Caucasian
rs7732104 Finland (isolate) MS
CTR
0.16
0.19
0.84
0.81
4 (0.024)
11 (0.030)
45 (0.265)
116 (0.319)
121 (0.712)
237 (0.651)
rs7732104 Finland (other) MS
CTR
0.20
0.19
0.80
0.81
21 (0.029)
26 (0.028)
241 (0.333)
306 (0.326)
462 (0.638)
606 (0.646)
rs7732104 Norway MS
CTR
0.19
0.17
0.81
0.83
13 (0.037)
12 (0.026)
110 (0.315)
136 (0.294)
226 (0.648)
314 (0.680)
rs7732104 Sweden MS
CTR
0.18
0.22
0.82
0.78
24 (0.040)
33 (0.052)
172 (0.287)
215 (0.336)
403 (0.673)
392 (0.613)
rs7732104 USA MS
CTR
0.17
0.17
0.83
0.83
29 (0.033)
5 (0.029)
238 (0.270)
50 (0.286)
615 (0.697)
120 (0.686)


Family-Based Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   A-Allele C-Allele A/A
(frequency)
A/C
(frequency)
C/C
(frequency)
 Caucasian
rs1055021 Finland MS
CTR
-
-
-
-
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
(-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details).

Family-Based Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   C-Allele A-Allele C/C
(frequency)
C/A
(frequency)
A/A
(frequency)
 Caucasian
rs13157656 Finland MS
CTR
-
-
-
-
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
(-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details).

Family-Based Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   G-Allele T-Allele G/G
(frequency)
G/T
(frequency)
T/T
(frequency)
 Caucasian
rs13161930 Finland MS
CTR
-
-
-
-
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
(-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details).

Family-Based Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   A-Allele G-Allele A/A
(frequency)
A/G
(frequency)
G/G
(frequency)
 Caucasian
rs1376174 Finland MS
CTR
-
-
-
-
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
(-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details).

Family-Based Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   C-Allele T-Allele C/C
(frequency)
C/T
(frequency)
T/T
(frequency)
 Caucasian
rs1901167 Finland MS
CTR
-
-
-
-
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
(-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details).

Family-Based Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   T-Allele C-Allele T/T
(frequency)
T/C
(frequency)
C/C
(frequency)
 Caucasian
rs2122564 Finland MS
CTR
-
-
-
-
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
(-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details).

Family-Based Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   A-Allele G-Allele A/A
(frequency)
A/G
(frequency)
G/G
(frequency)
 Caucasian
rs324061 Finland MS
CTR
-
-
-
-
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
(-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details).

Family-Based Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   T-Allele C-Allele T/T
(frequency)
T/C
(frequency)
C/C
(frequency)
 Caucasian
rs3805221 Finland MS
CTR
-
-
-
-
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
(-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details).

Family-Based Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   G-Allele A-Allele G/G
(frequency)
G/A
(frequency)
A/A
(frequency)
 Caucasian
rs3805226 Finland MS
CTR
-
-
-
-
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
(-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details).

Family-Based Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   T-Allele G-Allele T/T
(frequency)
T/G
(frequency)
G/G
(frequency)
 Caucasian
rs3828511 Finland MS
CTR
-
-
-
-
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
(-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details).

Family-Based Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   T-Allele C-Allele T/T
(frequency)
T/C
(frequency)
C/C
(frequency)
 Caucasian
rs4957361 Finland MS
CTR
-
-
-
-
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
(-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details).

Family-Based Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   T-Allele G-Allele T/T
(frequency)
T/G
(frequency)
G/G
(frequency)
 Caucasian
rs6860438 Finland MS
CTR
-
-
-
-
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
(-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details).

Family-Based Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   A-Allele G-Allele A/A
(frequency)
A/G
(frequency)
G/G
(frequency)
 Caucasian
rs7732104 Finland MS
CTR
-
-
-
-
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
0 (-)
(-) :  Either no data provided, or data otherwise not eligible for inclusion (see methods for details).
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MSGene Top Results
Top Results Details
1. HLA-DRB1
2. IL2RA
3. IL7R
4. TAGAP
5. CLEC16A
6. EVI5
7. GWA_16q24.1
8. GWA_5p13.1
9. TTC34
10. AHI1   
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