MSGene

MSGene - Polymorphism Details

Study:

Hensiek, 2003

Gene:

SPP1 (BNSP; BSPI; ETA-1; MGC110940; OPN)

View on SZGene

Protein:

secreted phosphoprotein 1 (SPP1/CALPHA1 fusion; bone sialoprotein I; early T-lymphocyte activation 1; osteopontin; osteopontin/immunoglobulin alpha 1 heavy chain constant region fusion protein; secreted phosphoprotein 1 (osteopontin, bone sialoprotein I, early T-lymphocyte activation 1); secreted phosphoprotein-1 (osteopontin, bone sialoprotein))

Chromosome:

4 (View: 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 X Y MT)

Status:

Updated 25 November 2011

Total number of polymorphisms investigated by this study: 4

Case-Control Studies (by ethnic group)
					Genotypes
Polymorphism ID# (Link to NCBI)	Population		T-Allele	C-Allele	T/T (frequency)	T/C (frequency)	C/C (frequency)
Caucasian
rs1126616 (795C/T)	UK	MS CTR	0.26 0.29	0.74 0.71	61 (0.067) 18 (0.085)	348 (0.383) 86 (0.408)	500 (0.550) 107 (0.507)

Case-Control Studies (by ethnic group)
					Genotypes
Polymorphism ID# (Link to NCBI)	Population		G-Allele	A-Allele	G/G (frequency)	G/A (frequency)	A/A (frequency)
Caucasian
rs1126772 (1128A/G)	UK	MS CTR	0.24 0.30	0.76 0.70	57 (0.059) 21 (0.086)	354 (0.369) 103 (0.420)	548 (0.571) 121 (0.494)

Case-Control Studies (by ethnic group)
					Genotypes
Polymorphism ID# (Link to NCBI)	Population		C-Allele	T-Allele	C/C (frequency)	C/T (frequency)	T/T (frequency)
Caucasian
rs4754 (327T/C)	UK	MS CTR	0.29 0.29	0.71 0.71	86 (0.082) 27 (0.083)	431 (0.409) 134 (0.410)	538 (0.510) 166 (0.508)

Case-Control Studies (by ethnic group)
					Genotypes
Polymorphism ID# (Link to NCBI)	Population		C-Allele	A-Allele	C/C (frequency)	C/A (frequency)	A/A (frequency)
Caucasian
rs9138 (1284A/C)	UK	MS CTR	0.26 0.27	0.74 0.73	67 (0.070) 17 (0.072)	371 (0.389) 91 (0.387)	516 (0.541) 127 (0.540)

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