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MSGene - Polymorphism Details
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 Study: Hensiek, 2003
 Gene: SPP1  (BNSP; BSPI; ETA-1; MGC110940; OPN)  Entrez Gene    View on SZGene
 Protein: secreted phosphoprotein 1  (SPP1/CALPHA1 fusion; bone sialoprotein I; early T-lymphocyte activation 1; osteopontin; osteopontin/immunoglobulin alpha 1 heavy chain constant region fusion protein; secreted phosphoprotein 1 (osteopontin, bone sialoprotein I, early T-lymphocyte activation 1); secreted phosphoprotein-1 (osteopontin, bone sialoprotein))  ProteinLink
 Chromosome: 4   (View: 1  2  3  4  5  6  7  8  9  10  11  12  13  14  15  16  17  18  19  20  21  22  X  Y  MT)
 Status: Updated 25 November 2011
Meta-Analysis     Gene Overview
Total number of polymorphisms investigated by this study: 4

Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   T-Allele C-Allele T/T
(frequency)
T/C
(frequency)
C/C
(frequency)
 Caucasian
rs1126616 (795C/T) UK MS
CTR
0.26
0.29
0.74
0.71
61 (0.067)
18 (0.085)
348 (0.383)
86 (0.408)
500 (0.550)
107 (0.507)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   G-Allele A-Allele G/G
(frequency)
G/A
(frequency)
A/A
(frequency)
 Caucasian
rs1126772 (1128A/G) UK MS
CTR
0.24
0.30
0.76
0.70
57 (0.059)
21 (0.086)
354 (0.369)
103 (0.420)
548 (0.571)
121 (0.494)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   C-Allele T-Allele C/C
(frequency)
C/T
(frequency)
T/T
(frequency)
 Caucasian
rs4754 (327T/C) UK MS
CTR
0.29
0.29
0.71
0.71
86 (0.082)
27 (0.083)
431 (0.409)
134 (0.410)
538 (0.510)
166 (0.508)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   C-Allele A-Allele C/C
(frequency)
C/A
(frequency)
A/A
(frequency)
 Caucasian
rs9138 (1284A/C) UK MS
CTR
0.26
0.27
0.74
0.73
67 (0.070)
17 (0.072)
371 (0.389)
91 (0.387)
516 (0.541)
127 (0.540)
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MSGene Recent Updates
MSGene Top Results
Top Results Details
1. HLA-DRB1
2. IL2RA
3. IL7R
4. TAGAP
5. CLEC16A
6. EVI5
7. GWA_16q24.1
8. GWA_5p13.1
9. TTC34
10. AHI1   
[see more]
MSGene Stats
Studies: 789
Genes: 809
Polymorphisms: 2907
Meta-analyses: 324
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