MSGene

MSGene - Polymorphism Details

Study:

Chiocchetti, 2005

Gene:

SPP1 (BNSP; BSPI; ETA-1; MGC110940; OPN)

View on SZGene

Protein:

secreted phosphoprotein 1 (SPP1/CALPHA1 fusion; bone sialoprotein I; early T-lymphocyte activation 1; osteopontin; osteopontin/immunoglobulin alpha 1 heavy chain constant region fusion protein; secreted phosphoprotein 1 (osteopontin, bone sialoprotein I, early T-lymphocyte activation 1); secreted phosphoprotein-1 (osteopontin, bone sialoprotein))

Chromosome:

4 (View: 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 X Y MT)

Status:

Updated 25 November 2011

Total number of polymorphisms investigated by this study: 4

Case-Control Studies (by ethnic group)
					Genotypes
Polymorphism ID# (Link to NCBI)	Population		T-Allele	C-Allele	T/T (frequency)	T/C (frequency)	C/C (frequency)
Caucasian
rs1126616 (795C/T)	Italy	MS CTR	0.35 0.29	0.65 0.71	41 (0.096) 63 (0.092)	213 (0.501) 273 (0.397)	171 (0.402) 352 (0.512)

Case-Control Studies (by ethnic group)
					Genotypes
Polymorphism ID# (Link to NCBI)	Population		G-Allele	A-Allele	G/G (frequency)	G/A (frequency)	A/A (frequency)
Caucasian
rs1126772 (1128A/G)	Italy	MS CTR	0.26 0.24	0.74 0.76	22 (0.052) 48 (0.070)	180 (0.424) 228 (0.331)	223 (0.525) 412 (0.599)

Case-Control Studies (by ethnic group)
					Genotypes
Polymorphism ID# (Link to NCBI)	Population		C-Allele	T-Allele	C/C (frequency)	C/T (frequency)	T/T (frequency)
Caucasian
rs4754 (327T/C)	Italy	MS CTR	0.35 0.29	0.65 0.71	41 (0.096) 63 (0.092)	213 (0.501) 273 (0.397)	171 (0.402) 352 (0.512)

Case-Control Studies (by ethnic group)
					Genotypes
Polymorphism ID# (Link to NCBI)	Population		C-Allele	A-Allele	C/C (frequency)	C/A (frequency)	A/A (frequency)
Caucasian
rs9138 (1284A/C)	Italy	MS CTR	0.35 0.29	0.65 0.71	41 (0.096) 63 (0.092)	213 (0.501) 273 (0.397)	171 (0.402) 352 (0.512)

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