MSGene

MSGene - Meta-Analysis of All Published MS Association Studies (Case-Control Only) rs1057141

Polymorphism:

rs1057141 (I333V)

Gene:

TAP1 (DAAP-57C1.5; ABC17; ABCB2; APT1; D6S114E; FLJ26666; FLJ41500; PSF1; RING4; TAP1*0102N; TAP1N)

View on AlzGene

Protein:

transporter 1, ATP-binding cassette, sub-family B (MDR/TAP) (ABC transporter, MHC 1; ATP-binding cassette sub-family B member 2; ATP-binding cassette, sub-family B (MDR/TAP), member 2; PSF-1; antigen peptide transporter 1; peptide supply factor 1; peptide transporter PSF1; peptide transporter TAP1; peptide transporter involved in antigen processing 1; really interesting new gene 4 protein; transporter 1, ATP-binding cassette, sub-family B; transporter associated with antigen processing; transporter, ATP-binding cassette, major histocompatibility complex, 1)

Chromosome:

6 (View: 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 X Y MT)

Status:

Updated 25 November 2011

Polymorphism:

1) Summary of Allele and Genotype Distribution of all Published Association Studies (by Ethnic Group)
			Alleles		Genotypes
	# Case-Control Samples		V-Allele (frequency)	I-Allele (frequency)	V/V (frequency)	V/I (frequency)	I/I (frequency)
Caucasian	5	MS CTR	0.17 0.15	0.83 0.85	10 (0.022) 13 (0.029)	132 (0.289) 110 (0.243)	314 (0.689) 330 (0.728)
Total	5	MS CTR	0.17 0.15	0.83 0.85	10 (0.022) 13 (0.029)	132 (0.289) 110 (0.243)	314 (0.689) 330 (0.728)

Meta-Analysis Methods * New * Cumulative Meta-analysis

2) Forest plot for polymorphism rs1057141 (I333V)

Please also see disclaimer for more information on these meta-analyses.

Meta-analyses have not been performed on the following polymorphisms since they lack published genotype data in at least four independent case-control samples, or the published genotype data was otherwise not eligible for inclusion (see methods for details):

TAP1*multiple
TAP1_BglI

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