MSGene

MSGene - Meta-Analysis of All Published MS Association Studies (Case-Control Only) rs1800454

Polymorphism:

rs1800454 (V379I)

Gene:

TAP2 (DAAP-57C1.2; ABC18; ABCB3; APT2; D6S217E; PSF2; RING11)

View on AlzGene View on SZGene

Protein:

transporter 2, ATP-binding cassette, sub-family B (MDR/TAP) (ABC transporter, MHC 2; ATP-binding cassette sub-family B member 3; ATP-binding cassette, sub-family B (MDR/TAP), member 3; PSF-2; antigen peptide transporter 2; peptide supply factor 2; peptide transporter PSF2; peptide transporter TAP2; peptide transporter involved in antigen processing 2; really interesting new gene 11 protein; transporter 2, ABC (ATP binding cassette); transporter 2, ATP-binding cassette, sub-family B)

Chromosome:

6 (View: 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 X Y MT)

Status:

Updated 25 November 2011

Polymorphism:

1) Summary of Allele and Genotype Distribution of all Published Association Studies (by Ethnic Group)
			Alleles		Genotypes
	# Case-Control Samples		A-Allele (frequency)	G-Allele (frequency)	A/A (frequency)	A/G (frequency)	G/G (frequency)
Caucasian	6	MS CTR	0.12 0.15	0.89 0.85	9 (0.017) 23 (0.037)	102 (0.196) 145 (0.230)	409 (0.787) 462 (0.733)
Total	6	MS CTR	0.12 0.15	0.89 0.85	9 (0.017) 23 (0.037)	102 (0.196) 145 (0.230)	409 (0.787) 462 (0.733)

Meta-Analysis Methods * New * Cumulative Meta-analysis

2) Forest plot for polymorphism rs1800454 (V379I)

Please also see disclaimer for more information on these meta-analyses.

Meta-analyses have not been performed on the following polymorphisms since they lack published genotype data in at least four independent case-control samples, or the published genotype data was otherwise not eligible for inclusion (see methods for details):

rs2228397 (1158G/T-codon-386)
rs4148876 (R651C)
TAP2*multiple
TAP2_EcoNI

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