MSGene

MSGene - Meta-Analysis of All Published MS Association Studies (Case-Control Only) rs3135499

Polymorphism:

rs3135499

Gene:

NOD2 (ACUG; BLAU; CARD15; CD; CLR16.3; IBD1; NLRC2; NOD2B; PSORAS1) View on PDGene

Protein:

nucleotide-binding oligomerization domain containing 2(NLR family, CARD domain containing 2; NOD-like receptor C2; caspase recruitment domain family, member 15; caspase recruitment domain protein 15; inflammatory bowel disease protein 1; nucleotide-binding oligomerization domain 2; nucleotide-binding oligomerization domain, leucine rich repeat and CARD domain containing 2)

Chromosome:

16 (View: 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 X Y MT)

Status:

Updated 25 November 2011

Polymorphism:

1) Summary of Allele and Genotype Distribution of all Published Association Studies (by Ethnic Group)
			Alleles		Genotypes
	# Case-Control Samples		C-Allele (frequency)	A-Allele (frequency)	C/C (frequency)	C/A (frequency)	A/A (frequency)
Caucasian	1	MS CTR	0.43 0.43	0.57 0.57	176 (0.183) 191 (0.199)	481 (0.499) 452 (0.471)	306 (0.318) 317 (0.330)
Total	1	MS CTR	0.43 0.43	0.57 0.57	176 (0.183) 191 (0.199)	481 (0.499) 452 (0.471)	306 (0.318) 317 (0.330)

Meta-Analysis Methods * New * Cumulative Meta-analysis

2) Forest plot for polymorphism rs3135499

Please also see disclaimer for more information on these meta-analyses.

Meta-analyses have not been performed on the following polymorphisms since they lack published genotype data in at least four independent case-control samples, or the published genotype data was otherwise not eligible for inclusion (see methods for details):

rs2066842
rs2066844 (R675W)
rs2066845 (G1881R)
rs2066847 (2936-indel)
rs5743277
rs5743291

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