MSGene

MSGene - Meta-Analysis of All Published MS Association Studies (Case-Control Only) rs12708716

Polymorphism:

rs12708716 (intron19)

Gene:

CLEC16A (Gop-1; KIAA0350; MGC111457)

Protein:

C-type lectin domain family 16, member A

Chromosome:

16 (View: 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 X Y MT)

Status:

Updated 25 November 2011

Polymorphism:

1) Summary of Allele and Genotype Distribution of all Published Association Studies (by Ethnic Group)
			Alleles		Genotypes
	# Case-Control Samples		G-Allele (frequency)	A-Allele (frequency)	G/G (frequency)	G/A (frequency)	A/A (frequency)
Caucasian	6	MS CTR	0.31 0.35	0.69 0.65	666 (0.094) 1485 (0.120)	3008 (0.424) 5591 (0.453)	3424 (0.482) 5278 (0.427)
Other/Mixed	1	MS CTR	0.36 0.46	0.64 0.55	26 (0.132) 41 (0.207)	91 (0.462) 98 (0.495)	80 (0.406) 59 (0.298)
Total	7	MS CTR	0.31 0.35	0.69 0.65	692 (0.095) 1526 (0.122)	3099 (0.425) 5689 (0.453)	3504 (0.480) 5337 (0.425)

Meta-Analysis Methods * New * Cumulative Meta-analysis

2) Forest plot for polymorphism rs12708716 (intron19)

Please also see disclaimer for more information on these meta-analyses.

Meta-analyses have not been performed on the following polymorphisms since they lack published genotype data in at least four independent case-control samples, or the published genotype data was otherwise not eligible for inclusion (see methods for details):

CLEC16A_unknownSNPs
rs1003603
rs1035088 (intron1)
rs1035089 (intron1)
rs11074945 (intron11)
rs11074952 (intron21)
rs11640376 (intron23)
rs11642009 (intron19)
rs11863016
rs12917716 (intron19)
rs12923849 (intron3)
rs12925474
rs12927355 (intron19)
rs13331231 (intron22)
rs16957849 (intron5)
rs16957895 (intron10)
rs16957976
rs16958021 (intron19)
rs16958028 (intron19)
rs16958108
rs17604868 (intron20)
rs17604903 (intron21)
rs17673553 (intron22)
rs17763452 (intron22)
rs17803698 (intron7)
rs17806299 (intron19)
rs2040
rs2041670
rs2041733 (intron22)
rs2080272
rs2286973 (exon19)
rs2286975 (intron11)
rs2302558 (intron3)
rs2903692
rs3813754 (intron3)
rs3901386
rs3960630 (intron23)
rs42369
rs4781025
rs6498146
rs6498168 (intron22)
rs7185300
rs7185978 (intron11)
rs7192790
rs7194545
rs7197758
rs7200940 (intron19)
rs7201845
rs7206912 (intron22)
rs725613 (intron19)
rs7403919 (intron10)
rs7404554
rs741175 (intron19)
rs741176
rs741177
rs767019 (intron22)
rs8048002 (intron3)
rs8050144 (intron10)
rs8055123
rs8055876 (intron1)
rs8055893
rs8059260
rs8060411 (intron20)
rs8061882 (intron19)
rs876457 (intron17)
rs876476
rs887864 (intron19)
rs9923455 (intron13)
rs9923856 (intron19)
rs9926367 (intron10)
rs9934231 (intron10)
rs9937607
rs9939298 (intron18)
rs9940096
rs998592

Print this page

Email this page

MSDF RSS

Text size

Share & Bookmark

MSGene Recent Updates

MSGene Top Results